KEGG   Brassica napus (rape): 106416310
Entry
106416310         CDS       T04128                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
bna  Brassica napus (rape)
Pathway
bna03030  DNA replication
bna03410  Base excision repair
bna03420  Nucleotide excision repair
bna03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106416310
   03410 Base excision repair
    106416310
   03420 Nucleotide excision repair
    106416310
   03430 Mismatch repair
    106416310
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bna03032]
    106416310
   03400 DNA repair and recombination proteins [BR:bna03400]
    106416310
Enzymes [BR:bna01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     106416310
    6.5.1.6  DNA ligase (ATP or NAD+)
     106416310
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     106416310
DNA replication proteins [BR:bna03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    106416310
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     106416310
DNA repair and recombination proteins [BR:bna03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     106416310
   NER (nucleotide excision repair)
    Other NER factors
     106416310
   MMR (mismatch excision repair)
    Other MMR factors
     106416310
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 106416310
NCBI-ProteinID: XP_013712622
LinkDB
Position
C5:complement(3160641..3166286)
AA seq 780 aa
MLTIRSSNYFRCISSLYTKTLNPKFSSASLSFTRRAPHSPFTSRRHRAMSSSRPSAFDAL
MSNARASAAKKKTPQASNPPRSPNKRKIEKTQDADLVKTETSDSAKPGSDSPSIAEDSKK
GAKKSRSLTQADKIEEMKSKIALLKKKPGDFDPERVSCWEKGERVPFLFIALAFDLISAE
SGRIVITDILCNMLRTVIATTPDDLVATVYLAANEIAPAHEGVELGIGEGSIIKAISEAF
GRTESEVKKLNTELGDLGLVAKGSRSSQTMMFKPESLTVVKVFNTFRQIAKESGKDSTEK
KKDRMKALLVAATDCEPLYLTRLLQAKLRLGFSNQTVLAALGQAAVYNEEHSKPPPNTKS
PLEEAAKIVKQVFTVLPVYDIIVPALLSGGVWNLPKTCNFTLGVPIGPMLAKPTKGVGEI
LNKFQDTVFTCEYKYDGERAQVHCMEDGTFEIYSRNAERNTGKYPDVALALSRLKKPSVK
SFIMDCEVVAFDREKKKILPFQILSTRARKNVNVNDIKVGVCIFAFDMLYLNGQQLIQEN
LNIRREKLYESFEEDPGYFQFATTLTSNDIDEIQKFLDASVDIGCEGLIIKTLNSDATYE
PAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKRTGVFGAFLLACYDANKEEFQSIC
KIGTGFSEAVLEERSTSLRSRVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPV
HRAATGIVDPDKGISLRFPRLLRVREDKKPEDATSSEQIADMYQAQKHNHPSNDAKGEDD
NT seq 2343 nt   +upstreamnt  +downstreamnt
atgttaacgattcgatcatcgaattacttccgatgcatatcttctctctacactaaaacc
ctaaaccccaaattctcctccgcctcactctcctttacccgccgagctccccactcaccc
ttcacctcgcgccgccacagagccatgtcttcttcacgcccctccgcattcgacgccctc
atgtcgaacgctcgcgcatccgccgccaagaagaagaccccccaagcctccaacccgcct
cgctcgccgaacaagaggaaaatcgaaaaaacccaagacgccgatttggtcaagactgaa
acttctgattccgcgaaacccggatcggattcaccttcaattgcggaggattcgaagaag
ggtgcgaaaaagtctaggtctttgacccaggcggacaagatcgaggaaatgaagagcaaa
atcgcgttgctgaagaagaagcctggggatttcgatccggagagagtgtcgtgttgggag
aaaggggagagagttccgtttctgtttatcgcgttggcgtttgatctgatctcagctgaa
agtgggcggattgtgattactgacattctctgtaacatgttgagaactgttattgctact
actcctgatgatttggttgctactgtttaccttgcggcgaacgagattgctcctgcgcac
gaaggtgttgagttggggattggtgaaggttcaattatcaaggcaatctctgaagctttt
ggtagaactgagtctgaggttaagaagcttaacacggagcttggagacttggggcttgta
gcaaaaggaagccgttcgtctcaaactatgatgttcaagccagagtcattgaccgttgtc
aaggttttcaacacatttcgacaaattgctaaggaaagtggaaaagatagtacagaaaag
aagaaggatcggatgaaggctctccttgtggcagcaacggactgtgaacctctttactta
actcgtttacttcaggcaaaattgcggttagggttctcaaaccagacggtcttagctgcc
ttgggacaagcagctgtatataatgaagagcactctaagccaccccctaataccaagtct
cctttagaagaggctgcgaagattgtgaaacaagtattcactgtgcttcctgtctatgac
attattgtccccgctcttttatctggtggtgtgtggaatcttcctaaaacttgtaacttt
acactcggtgttccaatcggaccaatgcttgcaaaaccaacaaaaggtgtaggtgagata
ctgaataaattccaagacaccgtcttcacatgcgagtacaagtatgatggagaacgtgca
caggtacattgtatggaggatggtacattcgagatatatagtcgaaatgccgaaagaaac
actgggaagtaccctgatgttgctcttgcgttgtcaagattaaagaagccttctgtgaaa
tcttttattatggattgcgaggttgttgctttcgacagggagaaaaagaaaattcttcca
tttcagatattgagcactcgagcccgtaaaaatgtgaatgttaacgatatcaaagttggc
gtatgcatctttgcctttgacatgttatatcttaatggccagcaacttatccaggagaat
cttaatattcgccgagagaagctatacgaatcatttgaggaagatcctggatatttccag
tttgcaacaactctaacatccaacgatattgatgaaatacaaaagtttcttgatgcgtcc
gttgatattggctgtgaagggttgatcattaaaacattgaattcagatgctacctatgag
cctgcaaagcgatcaaataattggctaaaactgaagaaagactacatggacagtattggg
gactctgtggatcttgtaccaattgctgctttccatggacgtggcaaacgcacaggcgtc
tttggtgcatttttgctagcttgctacgatgctaataaggaagagttccagagcatctgt
aaaataggcactgggttttctgaagccgttcttgaagagcggtctacaagtcttcgctct
agagtgattgctactccaaaacaatactaccgagttggagatagcctcaatccagatgtt
tggttcgagcccactgaggtctgggaagtaaaggcagctgacttgacaattagccctgta
catcgtgcagctaccggcattgttgaccctgataaggggatttctctacgctttcctcgt
ttactccgtgtacgagaagacaagaagccagaggatgcaacatcatcagaacagattgct
gatatgtaccaagctcagaaacacaaccatccaagcaatgatgccaaaggtgaagacgat
tga

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