Brassica napus (rape): 106439088
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Entry
106439088 CDS
T04128
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
bna
Brassica napus (rape)
Pathway
bna03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106439088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bna03041
]
106439088
03009 Ribosome biogenesis [BR:
bna03009
]
106439088
Enzymes [BR:
bna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106439088
Spliceosome [BR:
bna03041
]
Complex A
U1 snRNP components
U1 related factors
106439088
Complex B
106439088
Ribosome biogenesis [BR:
bna03009
]
Eukaryotic type
Pre-60S particles
Helicases
106439088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
106439088
NCBI-ProteinID:
XP_013735897
LinkDB
All DBs
Position
A3:complement(15853973..15858470)
Genome browser
AA seq
1052 aa
AA seq
DB search
MATAEAAPASAGPRYAPEDPTLPKPWKGLIDGSSGVLYYWNPETNVTQYERPSPPLPAGA
PPKLAQIPVPSAGQQGHQAQLELGKPVGHVPQQHGLQQQPQQFPSQHGRPQMMQQQQHPG
QQMPQQSGQQFSQPQGQSMAPQPHGHPSQQTYQPTPQQQQQQQAMQNQHSQMPQQLSHQY
PHSQQQYMGYRPYMQQQGTQNSHQTPPQMGPQGQQFPSQQEYNSMPPKREGEEFHRGEKT
GFSQPHLQNSEASPSQNTAFETKASSQRPNATQQYNGPQGSFQHPAAVTQFQQPGANLAH
QQLGPRPPHHMDQMLHQKSHASPFRSNNTYENNLQARPGNDSYGNTRMEGPMRGAQPRHP
AAMPEDIRIGGGPPAHADPAMGQTGHGPYGHAGPAFPTAGRPHFATTPDGPHLSPVDSYR
KQHEITVTGENIPAPFITFESSGLPPELLRELLSAGFPSPTPIQAQTWPIALQNRDIVAI
AKTGSGKTLGYLIPAFTLLRHCRNDPRNGPTVLILAPTRELATQIQNEALRFGRSSRISC
TCLYGGAPKGPQLQELERGADIVVATPGRLNDILEMRKIDFQQVSLLVLDEADRMLDMGF
EPQIRKIVNEIPPRRQTLMYTATWPNEVRKIANDLLVNPVQVNIGSVDELAANKAITQYV
EVVPQMEKERRLEQILRSQERGSKVIIFCATKRLCDHLSRSVGRNFGAVVIHGDKSQGER
DWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGV
AFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMRGGGGGGPGFNQDRRGMVNRFDSG
RGGSRWDSAGEFGGRGGGFGGRSGGFGMRDDSFGRGRGFPGPDGGRMNVGRGGFGRFGNN
NMDGRGFGRGGGGGRGFSRGGGRFDNRRGRSRSRSPDLVRPRRSPSYSRSRSRSYSRSRS
RSWSRSRSRSPRRSGHKRSRSYSRSPSPVYERRDRRPRVSGFDIKPPAESVVNPDTVGTA
AASETVVPAPLSERQGNGVVESEVEAALVDKP
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggctacggcagaagcagctccagcttctgctggtccacgctatgctccggaggatccc
actcttcccaaaccatggaagggactcatcgatggaagcagcggcgttttgtattactgg
aatcctgaaacgaacgttactcaatacgaaagaccttctccacctttgccagctggtgct
cctccgaagctagctcagattcctgtaccttccgcaggacaacaaggacatcaagctcag
cttgagctaggaaagcccgttggtcatgtgcctcagcaacatggtttacaacaacagcct
cagcagttcccatctcaacatggaaggccccaaatgatgcagcagcagcagcatccggga
cagcagatgcctcaacaatcaggtcaacagttttcacaaccacagggccaatctatggcg
ccgcagccacatgggcatccttctcaacagacgtatcagccaacaccacagcagcagcag
cagcagcaagcaatgcagaaccagcattcacagatgcctcagcagctgagccatcagtat
ccacattcacaacaacagtacatgggttataggccttacatgcaacaacaagggactcaa
aattcacatcagacgccacctcagatgggtccccagggtcagcagtttccgagccagcaa
gagtacaactcaatgcctccaaagagggagggggaggagttccataggggtgagaaaact
gggttttctcaaccccatttacaaaattctgaagcttcaccatctcaaaataccgccttt
gagactaaggcatcatcacaaagaccaaatgcaactcagcaatacaatgggcctcaagga
agctttcaacaccctgctgcagtcacacagtttcaacagccaggggctaatctggctcac
cagcagcttggacctaggcctccacatcacatggaccaaatgttgcaccagaagtctcat
gcttcccctttccgatctaataacacctatgagaataatctacaagctagacctggtaat
gactcctacggtaacacaagaatggaagggccgatgagaggtgcacaaccacgccatcct
gcagcaatgcctgaggatataaggataggtggcggtccacctgcacatgctgatccggcc
atggggcagacagggcatggaccatacggacatgctggtccagcctttccaaccgcagga
aggcctcattttgcaacaactcctgatggtccccatctttcgcctgttgatagttaccga
aaacagcatgaaatcacagtaactggtgagaacattccagcaccattcatcacgtttgaa
tctagtggtctcccacctgaattacttagagagttgctttctgctggatttccatcacca
acaccgatccaggctcaaacatggccaattgctctgcagaacagggatatagttgcaatt
gcaaaaactggttctggtaaaacattgggatacttgatccctgccttcactcttcttagg
cactgtcgtaatgacccccgcaatggccccacggttttgatcttagctcctactcgggag
ctagctacacagatacaaaatgaagcccttaggtttggccggtcttccagaatatcatgc
acttgcttgtatggtggagctccaaagggtcctcaattgcaagaattggaacgaggagct
gatattgtggtggcaactcctgggcgcctaaatgacatactggagatgaggaagattgat
ttccaacaagtttccctccttgtgcttgacgaagcagatcgaatgcttgacatgggtttt
gaaccccaaatccgtaagattgtgaatgaaatacctccgcggagacagactcttatgtac
actgcgacttggccaaatgaagttaggaaaattgcaaacgatcttcttgtgaaccctgtc
caagttaacataggcagcgtagatgagttggctgcaaacaaggcgataacgcagtatgtt
gaagttgtcccacaaatggagaaggagaggcgtttggagcaaatccttaggtcgcaagaa
cgaggttcaaaagttataatattctgtgccacgaaaaggctttgtgaccatctttcacgc
agcgtcggacgtaattttggtgctgttgtaatccatggagacaaatctcaaggtgagaga
gattgggtacttaaccagttccgcagcgggaagtcgtgtgtgttgatagctactgacgtt
gctgcccgggggctcgatataaaagacataagagttgtgatcaactacgattttccaact
ggtgttgaagactatgttcaccgtatcgggagaactggtcgagctggtgcaactggagtt
gcattcactttctttacagagcaagattggaaatatgcgcctgatttaatcaaagtcctg
gaaggagcaaaccagcaagtaccgcctcaagtgagggacattgcaatgcgcggtggcggt
ggtggtggtccgggttttaatcaggaccgaagaggcatggtaaaccgatttgactctggc
cgtggtggtagccgttgggattctgcaggtgagtttggtgggcgtggcggtgggtttgga
ggccgaagtggcggatttggaatgagagatgattcatttggacgtggtcggggttttcct
ggtcctgatggtggtcgtatgaatgtgggtagaggtggatttggtcggtttggtaacaat
aatatggatggacgaggctttggtcgtggtggtggtggtggtagaggctttagtcgtggt
ggtggacggtttgataacagaagaggtagaagccgtagcagaagtcctgatttggttagg
ccacgtcgtagcccgagctatagcaggagccgcagccggagctatagccgtagtcgtagc
aggagctggtcacgctcaaggagtcgtagccctaggcgtagtggtcataaacggagcaga
agctatagccgtagtcctagtccagtgtatgaaagaagggataggcgaccgcgtgtttct
gggtttgatattaaaccaccagctgagtctgtcgtgaatccagacactgtaggaactgct
gctgcttctgaaaccgtggtccctgctccattgtctgagagacaagggaatggtgttgtc
gagtctgaggtagaagcagctttagttgataaaccgtaa
DBGET
integrated database retrieval system
