Brassica napus (rape): 125609511
Help
Entry
125609511 CDS
T04128
Name
(RefSeq) 4-coumarate--CoA ligase 1
KO
K01904
4-coumarate--CoA ligase [EC:
6.2.1.12
]
Organism
bna
Brassica napus (rape)
Pathway
bna00130
Ubiquinone and other terpenoid-quinone biosynthesis
bna00940
Phenylpropanoid biosynthesis
bna01100
Metabolic pathways
bna01110
Biosynthesis of secondary metabolites
Module
bna_M00039
Monolignol biosynthesis, phenylalanine/tyrosine => monolignol
bna_M00137
Flavanone biosynthesis, phenylalanine => naringenin
Brite
KEGG Orthology (KO) [BR:
bna00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00130 Ubiquinone and other terpenoid-quinone biosynthesis
125609511
09110 Biosynthesis of other secondary metabolites
00940 Phenylpropanoid biosynthesis
125609511
Enzymes [BR:
bna01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.12 4-coumarate---CoA ligase
125609511
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
VitD-bind_III
Motif
Other DBs
NCBI-GeneID:
125609511
NCBI-ProteinID:
XP_048636951
LinkDB
All DBs
Position
A5:9597392..9600383
Genome browser
AA seq
551 aa
AA seq
DB search
MAPQEDAMQKQSSNNNSDVIFRSKLPDIYIPNHLPLHDYIFQNISEFASKPCLINGPTGH
VYTYSDVHVASRRIAAGFQKLGVNQNDVVMILLSNCPEFVLSFLAASFRGATATAANPFF
TPAEIAKQAKASNSKLIVTESRYVDKIKDLQNDGVIIVCTDEELSPIPEGCLRFTELTQS
TEMETVEISSDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGDNPNLYFHSDDVIL
CVLPLFHIYALNSIMLCGLRVGASILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAMAK
SPETEKYDLSSIRVVKSGAAPLGKELEDAVSAKFPNAKLGQGYGMTEAGPVLAMSLGFAK
EPFPVKSGACGTVVRNAEMKIIDPDTGDSLSKNKPGEICIRGHQIMKGYLNNPAATAETI
DKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHQDITDVAVVAM
KEEAAGEVPVAFVVKSKDSELSEDDVKQFVAKQVVFYKRINKVFFVESIPKAPSGKILRK
DLRAKLANGLV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggctccacaagaagacgccatgcagaaacagagcagcaacaacaacagtgacgtcata
ttccgatcaaagcttccggatatttacatccccaatcacctccctctccacgactacatc
ttccaaaacatctccgagttcgcctccaagccttgcctgatcaacggtcccaccggccac
gtgtacacttactccgacgtccatgtcgcctcccgtcgcatcgccgccggttttcaaaaa
ctcggcgttaaccaaaacgacgtcgtgatgatcctcctctcgaactgccccgagttcgtc
ctctctttcctcgccgcttctttccgcggcgcaaccgcaaccgccgccaacccgtttttc
actccggcggagattgccaaacaggccaaagcctcgaactcgaagctcatcgtcaccgag
tctcgctacgtcgataaaatcaaagacctccaaaacgacggcgttataatcgtctgcacc
gacgaggaactttctccgatcccggaaggctgcctccgattcaccgagttgactcagtca
accgaaatggaaacggtggagatttcttccgacgacgtggtggcgcttccttactcctcc
ggcacgacgggtctacccaaaggagtgatgctgactcacaagggactagtcacgagcgtc
gctcagcaagtcgacggcgataatccgaatctttacttccacagcgatgacgtcatactc
tgtgtcttgcccttgttccatatctacgctttgaactcgatcatgctgtgtgggcttaga
gttggtgcctccatcttgatcatgcccaagttcgagatcaatctgctcttggagctcata
cagcggtgtaaagtcacggttgctccgatggttccgccgattgttttggccatggcgaag
tcgccggagacggagaagtatgacttgagctcgattagggttgtcaagtctggtgctgcc
ccgcttggtaaggagcttgaagatgccgtcagtgccaagtttcctaacgccaaactcggt
cagggatacggaatgacggaagcaggtccggtgctagcaatgtcgttagggttcgcgaaa
gagccgtttccagtgaagtcgggggcttgtggtacggtggtcagaaacgccgagatgaaa
atcatcgatccagacaccggagactcactttccaaaaacaaacctggagagatttgcatc
cgtggtcaccagatcatgaaaggttacctcaacaacccggcggctacagcagagaccata
gacaaagacggctggcttcacaccggagatatcgggttgatcgatgacgacgacgagctt
ttcattgttgatcgtttgaaagagcttatcaagtacaaaggttttcaagtggctccggct
gagctagaggctctcctcatcggccatcaggatatcaccgacgtggccgttgtcgcaatg
aaagaagaggctgctggtgaagttcccgttgcgtttgttgtgaaatccaaggattcagag
ttatcagaagatgatgtgaaacaattcgtggcgaaacaggttgtgttttacaagagaatc
aacaaagtgttcttcgttgagtccattcctaaagctccatcagggaagatattgaggaaa
gacctgagggcaaaactagcaaatgggttggtgtaa
DBGET
integrated database retrieval system