KEGG T04113: Bovatus

Bacteroides ovatus: Bovatus_00603

Entry

Bovatus_00603     CDS       T04113

Name

(GenBank) Putative DNA ligase-like protein

K01971

bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]

Organism

boa Bacteroides ovatus

Brite

KEGG Orthology (KO) [BR:boa00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Bovatus_00603
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:boa03400]
    Bovatus_00603
Enzymes [BR:boa01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Bovatus_00603
DNA repair and recombination proteins [BR:boa03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Bovatus_00603

SSDB

Motif

Pfam:

LigD_N

Other DBs

NCBI-ProteinID:

ALJ45269

LinkDB

Position

736704..737321

AA seq 205 aa
MAKNSPDEGKNIKMVEKQAVEASMINLKEYRAKRQFGKTPEPMAETVETPNRMPVFVVQK
HDASHFHFDFRLEVDGVLKSWVVPKGPSMNPKDKRLAIEVEDHPLSYAHFEGVIPEGNYG
AGTVEIWDSGTYAYVGNNRNISAAIKNGILEFKLHGHKLKGLFVLIHTNMDDQDKDWLLI
KKDDVFAATHVYDAKIIPSYDEVFL

NT seq 618 nt +upstreamnt +downstreamnt
atggcaaagaattctcccgatgaaggaaaaaacatcaaaatggtagaaaagcaggcggtt
gaagcctctatgatcaacctcaaagagtaccgggcaaaaaggcaattcggtaaaacaccg
gaaccgatggcggagacggtggaaactcccaatcgaatgcctgtttttgttgttcagaag
catgatgccagccattttcatttcgattttcgtttggaagtagatggagtattaaaaagt
tgggtggtgcctaaaggaccttccatgaatccaaaagataagaggttggccatagaagta
gaagaccaccccttgagttatgcgcactttgaaggagttataccggaaggtaactatgga
gcaggtacggtggaaatatgggatagtggaacctatgcttacgttggtaataatcgtaac
atttccgctgctattaaaaatggaatacttgaattcaagttacacgggcataaactcaaa
gggctatttgtccttatacataccaatatggatgatcaggataaagactggttgttgata
aagaaagacgatgtatttgcggccactcacgtttacgatgcaaagattattccgtcttat
gatgaggtattcctgtaa

DBGET integrated database retrieval system