Brassica oleracea (wild cabbage): 106295190
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Entry
106295190 CDS
T04124
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106295190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
boe04131
]
106295190
Membrane trafficking [BR:
boe04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
106295190
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GFIT
Motif
Pfam:
Clathrin
WD40
zf-RING_2
ANAPC4_WD40
zf-RING_16
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
106295190
NCBI-ProteinID:
XP_013586479
UniProt:
A0A0D3C8G4
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Position
C5:3118181..3124107
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AA seq
971 aa
AA seq
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MASLPSENGVDGDDEREEEEEDEEEEEEEENGEEEGEEEPRLKYQRMGGNVPSLLSNDAA
SCIAVAARMIALGTHDGTVHILDFLGNQVKEFRAHTAPVNDLSFDSEGEYIGSCSDDGSV
VINSLFTDDEKMRFDYHRPMKAISLDPDYTKKQSKRFVAGGLAGHLYMNSKKWFGYKDQV
LHSGEGPIHSVKWRGSLIAWANDTGVKVYDTAKDQRVTFIERPRGSPRPEALLPHLVWQD
DTLLVIGWGTSVKIASIKSDQQKPAYGTYRQVQMSSLNQVDIVASFQTSYFISGIAPFGD
SLVILAYIPTEEDGMKEISSTTTLSRQGNAQRPEVRIVSWNSDELTMDALPVHGFEHYKA
KDYSLAHAPFPGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHINWLLQHGFHEKA
LAAVEAGEGRNELIDKVGAGYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAQLR
QLPVLVPYMPTDNPRLKDTVYEVALVALATNPSYHKELLSTVKSWPRSVYSALPVISAIE
PQLNTSSMTDALKEALAELYVIDGQHEKAFALYADLLKPEVFDFIEKYNLHEAIRGKVVQ
LMLLDCKRATALFIQNRDLIAPSEVVPQLLKAGKKCDSRYYLYLYLHALFQVSPDGGKDY
HDMQVELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDLLREQVFVLGRMGNAKQALAV
IINKLGDIEEAVEFVSMQHDDDLWEELIKQCLNKPEMVGLLLEHTVGNLDPLYIVNMVPN
GLEIPRLRDRLVKIVTDYRTETSLRHGCNDILKTDIVNLLVKCFNEARRGVCLSNEEDDS
RGKREDNNRSISQRMVVDKSLSIKMTEVKSKTRGDTRCCMCFDPVSIRGDTVVVFFCCHA
YHMTCLMDAAFSDSNNKTAKGSSGYGYGYDNGVEEEDTEDEEEDDSNDGDRSGRSRLRCI
LCTTAAAASAR
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgcttccgtctgaaaacggcgttgacggagatgacgaaagggaggaggaggag
gaagatgaagaagaagaagaggaggaagagaacggagaagaagagggcgaggaggagcct
cgcctcaaataccagcggatgggaggcaacgtaccttctttgctctccaacgacgctgct
tcctgcatcgccgttgccgcgaggatgatcgctctcggtactcacgacggaacggtccac
atcctcgatttcctcgggaatcaggttaaagagtttcgtgcccacacggccccggttaat
gacctaagctttgacagtgagggagagtatatcggaagctgttcagacgatggctctgtt
gttataaacagccttttcactgatgatgagaagatgaggtttgattatcatcgccccatg
aaggctatttccttggatccggattacaccaagaagcagtcgaagagatttgtagctggt
ggcttggctggtcacttgtatatgaactcgaagaagtggtttggttataaagatcaggtg
ctgcattctggggaaggtccaatccattctgtgaaatggagaggaagtctcattgcgtgg
gctaatgatactggtgttaaagtttatgatacagccaaagatcagcgtgttacttttatt
gaaagaccccgaggaagcccccggcctgaggctttgcttccccacttggtttggcaggat
gacactcttcttgtgattggttggggaacatctgtcaaaattgcttcaattaaatcagac
cagcaaaaaccagcatatggaacatataggcaggttcagatgtctagtctaaaccaagtg
gacattgtggcgtcgttccaaactagctatttcatttcagggattgctccctttggtgat
tctctagttattcttgcatatatacccactgaagaggatggcatgaaagaaattagcagc
accactactctatctcgtcagggaaatgcccagaggcctgaagtacgcattgtatcatgg
aacagtgatgaacttacaatggatgctcttccggtacatggctttgagcattacaaggcg
aaagactattcccttgctcatgctcctttcccaggtagtagctatgctgggggacagtgg
gcggctggtgatgaaccactgtactatatcgtgtctccaaaggatgttgtgattgcaaaa
cccagggacgctgaagatcacattaactggcttttgcaacatggattccacgagaaagca
ctagcagctgtcgaggctggtgaaggacgaaacgaactaattgataaggtgggtgctggg
tatcttgatcatttgattgtggaaagaaaatatgctgaagcagcatctttgtgcccaaaa
ttgttacgaggatctgcttcagcctgggagaggtgggttttccattttgctcaactacgc
cagctgcctgtccttgttccctatatgcctaccgataacccaaggctcaaggatactgtg
tatgaggttgctctagtggcactggcaacaaacccctcataccataaagagcttttgtcc
accgttaaatcttggccacgttcagtatattctgctttgcctgttatctcagcaatagag
cctcagttgaacacatcttcaatgactgatgccctcaaagaggcgctggcagagctgtat
gtgattgatggacagcacgagaaagccttcgccctatatgctgatcttctcaaaccagaa
gtgttcgacttcattgagaaatacaacttgcatgaggcgattcgtggaaaggttgtccag
ttaatgctgcttgattgcaagcgtgccactgccttgtttatccaaaacagggatttgatt
gctccatcggaagtggtcccacaacttttgaaagctggcaagaaatgtgattcaagatat
tacttgtacttatatctgcatgcgttatttcaagtcagtccagatggtgggaaggattat
catgatatgcaggtagaactatatgcggaatacgatacaaagatgctgcttccattccta
cgtagcagtcaacattacaagttagaaaaggcatatgaactttgtgtcaagaaagatctg
ctaagagagcaagtttttgtcctgggaaggatgggaaatgcaaaacaagctcttgctgtc
atcattaataaactgggggatatagaagaggctgtggaatttgtgtccatgcagcacgac
gatgatctctgggaagaactgataaaacaatgtctgaacaagcccgagatggtgggcttg
ctgttggagcacacggttggcaaccttgaccctctttacatagttaatatggtcccaaat
ggcttggaaatacctcgattaagggatcgattggtcaaaatcgtgacagattacagaacc
gagacatctctaagacacggttgtaatgacattctcaagacggacattgtgaatcttctg
gtcaagtgcttcaacgaggcgagacgtggggtctgccttagcaacgaagaagacgattcc
cgtggaaagagagaagacaacaatcgatcaatctcacagagaatggtagtagataaatca
ttgagcattaagatgacagaggtgaagtcgaagacacgaggggacacacgttgttgcatg
tgcttcgacccggtgtcgataagaggggacaccgtggtggtcttcttttgctgtcatgct
taccacatgacgtgtctcatggatgctgccttcagcgacagcaacaataagacagccaaa
ggttcttcgggatatggatacggctacgataatggtgtggaggaggaagatactgaggat
gaggaagaagatgatagtaatgatggagacaggtccgggaggtcgcggttacggtgcata
ttatgtactactgccgctgctgcgtccgctcggtag
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