Brassica oleracea (wild cabbage): 106311946
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Entry
106311946 CDS
T04124
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
boe
Brassica oleracea (wild cabbage)
Pathway
boe03013
Nucleocytoplasmic transport
boe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
boe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106311946
03015 mRNA surveillance pathway
106311946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
boe03019
]
106311946
Messenger RNA biogenesis [BR:
boe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106311946
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
106311946
NCBI-ProteinID:
XP_013604750
UniProt:
A0A0D3DWZ0
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Position
C8:37114982..37118014
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AA seq
410 aa
AA seq
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MAKPSRGRRSPSASGSSSRSSSRSRSRSGSSRSRSLSSSSPSRSVSSGSRSPPRRGKSSA
GAARRGRSPPPPKGASSPSKKASTPIQESLVLHVDCLSRNVNEGHLKEIFGNFGEVVHVE
LAMDRAVNLPKGYAYVEFKARSDAEKAQLSMDGGQIDGNFVKAKFTLPPRQKVPLPPPPK
PVSSAPKGEAPKSDNASADVEKDGPKRPRETSPLRKTSLSPRRRSPLPRRGASPRRLPVS
SPRRRPSSPIRRRGDTPPRRRAGSPFRGRSPSSPPPRRQRSPPRGSPRRIRGSPVRRRSP
PPLRRRSPPRRLRSPLRRSPIRRRSRSPIRRPVRSRSKSISPRRGRVPAGRRGRSSSYSS
SPSPRRVPRKISRSRSPRKISRSRSPKRPLRGKRSSSNSSSSSSPPPRKT
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaagccgtggccgtcgttctccatccgcctccgggtcctcatctcgttcc
agctccagatctcgttcccgctccggttcgagtcggtccaggtctctttcttcgtcatct
ccttcccgtagcgtcagctcagggagtcgcagccctcctcgtcgcggaaaaagttctgct
ggggctgctaggcgaggtcgctctcctcctcctccaaaaggagcctcttcaccctctaag
aaagctagtacgcctattcaggaatcacttgttctccatgttgattgtcttagcaggaat
gtgaacgaaggccatctcaaagagatatttggaaactttggtgaagttgtacacgtagaa
cttgcgatggatcgagctgttaatcttccaaaaggatatgcttatgttgagttcaaagca
agatctgatgctgagaaagctcagctttctatggatggtggccaaattgatggaaacttt
gttaaagcaaagttcactctaccaccgcgtcagaaagtacctctacctccacctcctaag
cctgtttctagtgcaccaaaaggagaggctccaaaatctgataatgccagtgctgacgtt
gagaaagatgggcccaaacgcccaagagagacttctccgctacggaaaacatcactttct
ccaagaaggcgatcaccactgcctaggagaggcgcatcacctaggagattgcctgtttct
tctcctcgccggaggcctagctctcctatccgccgtcgcggtgatacgccacctagacgc
agggcaggatcgccatttagaggccgttctccatcttctccccctccaagacgacaaaga
tctcctccaaggggctcccctagaagaatccgtggcagtcctgttcgaagacggtctcct
cctcctctaaggcgaaggtcacctccaagaaggctacgcagtcccctcagaagatctcct
atccgcagacgtagccgatccccaattcgtagacctgttcgctctcgttcaaagtccatc
tcaccccgcaggggaagagttccagctgggagacgtgggaggtcatcatcttactctagt
tccccaagtcccagaagggttcctaggaagatctcacggagccgcagtcctaggaagatt
tcaaggagccgcagtccgaagaggccactgagaggaaaaagaagcagcagtaacagcagc
agtagcagctcaccgcctcctcgcaaaacataa
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