Burkholderia oklahomensis E0147: DM82_539
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Entry
DM82_539 CDS
T03284
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bok
Burkholderia oklahomensis E0147
Pathway
bok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM82_539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bok03019
]
DM82_539
Enzymes [BR:
bok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DM82_539
Messenger RNA biogenesis [BR:
bok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DM82_539
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
UTP25
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AIO66129
LinkDB
All DBs
Position
1:627841..629286
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AA seq
481 aa
AA seq
DB search
MSDSVATPVDATFDQFGLAAEILKAIADQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTG
KTASFSLPIIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAV
VFGGVDMNPQMAELRRGVEVLIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRNPQTIEVARSNATATNVTQIVYDVA
EGDKQAAVVKLIRDRALKQVIVFCNSKIGASRLARQIERDGIVASAIHGDRSQSERMQAL
DAFKRGEIEALVATDVAARGLDIVELPAVINFDLPFSAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRALPLEALELDLPRHRHDERGGRRERDRDERRGASVGRRSAGG
ERPHHPRREAPVDDFFLKPYEPSTPAQGSEEAKPVQPEKKAPKQPLAALLGGFGMPRKTS
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattctgttgccacgcctgtcgacgcgacgttcgatcaattcggccttgccgcc
gagatcctgaaagcgattgccgaccagggctatacgacgccgacgccgatccaggcgaag
gcgattccggtcgtgctgtccggccgcgacgtgatgggcgccgcgcagaccggcaccggc
aagaccgcgagcttctcgctgccgatcatccagcgcctgctgccgcaggcgagcacgagc
gcgtcgcccgcccgccacccggtgcgcgcgctgatcctcacgccgacccgcgagctcgcc
gaccaggtcgccgcgaacgtgcacgcgtacgcgaagcacacgccgctgcgcagcgcggtc
gtgttcggcggtgtcgacatgaatccgcagatggccgagctgcgccgcggcgtcgaggtc
ctgatcgcgacgccgggccgcctgctcgaccacgtccagcaaaagaccgcgaatctcggg
caggtgcagatcctcgtgctcgacgaagcggaccggatgctcgacatgggcttcctgccc
gatctgcagcggatcctgaacctgctgccgaaagagcgtcagacgctgctgttctcggcg
acgttctcgccggaaatcaagaagctcgcgtcgacctacctgcgcaacccgcagacgatc
gaggtcgcgcgcagcaacgcgaccgcgacgaacgtcacgcagatcgtctacgacgtcgcc
gagggcgacaagcaggcggccgtcgtcaagctgatccgcgaccgcgcgctcaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccgccttgcgcgccagatcgagcgcgac
gggatcgtcgcgtcggcgatccacggcgaccgttcgcaaagcgagcggatgcaggcgctc
gacgcgttcaagcgcggcgagatcgaagcgctcgtcgcgaccgacgtcgccgcgcgcggc
ctcgacatcgtcgagctgccggccgtcatcaacttcgatctgccgttcagcgcggaagac
tacgtgcaccggatcggccgcacggggcgcgcgggcgcgtcgggcgacgcgctgtcgcta
tgcagcccgaacgagcgcaagcagcttgccgacatcgagaagctgatcaagcgcgcgctg
ccgctcgaggcgctcgagctcgacctgccgcgtcaccgccacgacgagcgcggcggccgc
cgcgagcgcgaccgtgacgagcgccgcggcgcatccgtcggccgccgctcggcgggcggc
gagcgcccgcatcatccgcgccgcgaagcgccggtcgacgatttcttcctgaagccgtac
gagccgtcgacgccggcgcaaggctcggaagaggcgaagcccgtgcagccggagaagaag
gcgccgaagcagccgctcgccgcgctgctcggcgggttcgggatgccgcgcaagacgtcg
tcgtga
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