KEGG   Burkholderia oklahomensis E0147: DM82_5456
Entry
DM82_5456         CDS       T03284                                 
Name
(GenBank) DEAD/H associated family protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
bok  Burkholderia oklahomensis E0147
Brite
KEGG Orthology (KO) [BR:bok00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bok03400]
    DM82_5456
Enzymes [BR:bok01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     DM82_5456
    5.6.2.6  RNA 3'-5' helicase
     DM82_5456
DNA repair and recombination proteins [BR:bok03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    DM82_5456
SSDB
Motif
Pfam: DEAD_assoc DEAD Helicase_C Lhr_WH DprA_WH ResIII
Other DBs
NCBI-ProteinID: AIO70141
LinkDB
Position
2:2043206..2048251
AA seq 1681 aa
MTSCSPCCATAPFTNPSQPLTLDEGHRGTPRPAAGALDAFHPVVAAWFSDTFAAPTGAQA
LAWPHIKAGRSTLVAAPTGSGKTLTAFLSALDDLVRDALAHDGALPDETLVVYVSPLKAL
SNDIHVNLEAPLAGIAAEIARRGLPVPQIRTAVRTGDTTQAERVAHRKHAPHILVTTPES
LYVLLSSESGRRMLAKTRTVIVDEIHALANNKRGSHLALSLERLDALVGRKPPRIGLSAT
QKPVEAVARFLVGGRDDAPLDCAIVDTGHARTRDLALELPPVPLGPVMANDVWERLYDRI
AELAAAHRTTLVFVNTRRMAERAARHLADRLGADAIAAHHGSLAKEHRFDAEQRLKHGKL
KLLVATASLELGIDIGDVDLVCQLGSPRGIAPFLQRVGRSGHRVGGVPKGRLFPLSRDEL
VECAALLDCVRRGELDRLRIPHAPLDVLAQQLVAEVACREWDEDALYRCMTQAAPYAALS
REQFDDVLKMLAEGFTSRRGARAAYLHRDVVAHAVRGRRGARLAAVTSGGTIPDNADYAV
LLEPQGVNIGTVNEDFAVESLAGDVFQLGNQSYRIVRVETGRVRVEDAHGQAPNIPFWLG
EAPARSDELSAGVARLRAHVDALLARGDARGDARGADDSADVVDVDAQNVGAAVAIGRVS
RTGDDARHARPNAPSASRVTASARRDAPLARADTPASLTRTRPRAETGSPPPGKAAATGA
CAAPPADARTPPARDGEAAPFAQDGRPVAAADTTGHDASLGRDAAPRPAPAAASLPAAAS
AETAPSETAPSEAAPEPRRLAPVLAWLTGELGLDAEAARQIADYLARARAALGALPTQDT
LVMERFFDESGGMQLVIHSPFGNRINRAWGLALRKRFCRTFNFELQAAATDDALILSLSL
AHSFALDEVWRYLRSASAEHVLIQALLDAPLFNARWRWNATTSLALPRFAGGRKVAPQLQ
RMKSDDLLATVFPDQVACAENIVREREVPKHPLVDQTLDDCLHEAMDTDGWLALLRRIES
GGVALVARDLPAPSPLAAEILNAKPYAFLDDAPLEERRTQAVLARRWTDPEAADDLGALD
AGAIDAVRDEAWPLVRDDDEMHDALVGLACVSDGEIDANDGWRACAERLAARKRAARLAL
ADGRGLWLPAERVACMRALYGGDAALEPPPGFDAPWAPDAALVDVIRARLTGFGPLTADA
LAAPLALPASSVAIALAALEREGYAMRGRFTPGARDDEWCERHLLARIHRYTVKRLRREI
EPVELADFMRFLFHWQRVAPDTRGMGVDALASVVHQLEGFEAAASAWEDELLPARLADYV
TGGLDEPCRAGKLTWARLGAPAKAASVPVKTTPVVLLPRRELAVWQALRDPAAQPALSAR
AERVRATLAAYGAMFFDELVAHARLLPVELERALGELVAAGLVNADSFAGLRALIKPAAQ
RSAHRSSRARRGGALIGGMDDAGRWALVQRLPLTRADFGDDEDALEDVENGGGIGVARRL
DDPDAVALGDARVARAMRAAPPPSGRHAIAPAALEHVARTLLRRYGVVFWRILACEAEWM
PSWRELLPVYRRLEARGEIRGGRFVAGLAGEQFALPDAIPILRELRRRPAEGLMLCVSGA
DPLNLTGTLLPGDRVPALAGNRILFRDGVPIASLVGGQFVYARELDAAEQDDARARLARH
R
NT seq 5046 nt   +upstreamnt  +downstreamnt
gtgacgtcctgttcgccatgctgcgcgacggcaccatttaccaacccaagtcagccccta
acgcttgacgaaggacataggggcaccccccgccccgccgccggcgcgctcgatgcgttc
caccccgtcgtcgccgcctggttctccgacacgttcgccgcgccgacgggcgcgcaggcg
cttgcgtggccgcacatcaaggccggccgctcgacgctcgtcgccgcgccgacgggctcc
ggcaagacgctcaccgccttcctgtccgcgctcgacgatctggtgcgcgatgcgctcgcg
cacgacggcgcgctgccggacgagacgctcgtcgtctacgtgtcgccgctgaaggcgctg
tcgaacgacatccacgtgaatctcgaggcgccgctcgccggcatcgccgccgaaatcgca
aggcgcgggctgccggtgccgcagatccgcaccgcggtccgcacgggcgacacgacgcag
gccgagcgcgtcgcgcaccgcaagcacgcaccgcacattctcgtcacgaccccggaatcg
ctgtacgtactgctgtcgtccgaatcgggccggcgcatgctcgcgaagacgcgcaccgtg
atcgtcgacgaaatccatgcgctcgcgaacaacaagcgcggcagccatctcgcgctgtcg
ctcgagcggctcgacgcgctcgtcggccgcaagccgccgaggatcgggctgtccgcgacg
caaaagccggtcgaggcagtcgcgcgctttctcgtcggcggccgcgacgacgcgccgctc
gactgtgcgatcgtcgacacgggccatgcgcgcacgcgcgacctcgcgctcgaactgccg
cccgtgccgctcggcccggtgatggcgaacgacgtgtgggagcgcctctacgaccggatc
gccgagctcgcggccgcgcaccggacgacgctcgtgttcgtcaacacacgccggatggcc
gagcgcgccgcgcgccatctcgccgaccgcctgggcgcggacgcgatcgccgcgcatcac
ggcagcctcgcgaaagagcatcgcttcgacgccgagcagcgcttgaaacacggcaagctc
aagttgctcgtcgcgaccgcgtcgctcgagctggggatcgacatcggcgacgtcgatctc
gtctgccagctcggctcgccgcgcgggatcgcgccgttcctgcagcgcgtcggccgctcc
gggcatcgggtcggcggcgtgccgaaggggcggctctttccgctgtcgcgcgacgagctc
gtcgaatgcgcggcgctcctcgactgcgtgcggcgcggcgagctcgacaggctgcggatt
ccgcacgcgccgctcgacgtgctcgcgcagcagctcgtcgccgaggtcgcgtgccgcgag
tgggacgaggacgcgctctatcgctgcatgacgcaggccgcgccgtacgcggcgctttcg
cgcgagcagttcgacgacgtgctgaagatgctcgccgaaggcttcacgagccggcgcggc
gcgcgcgccgcgtacctgcatcgcgacgtcgtcgcgcacgcggtgcgcgggcggcgcggc
gcgcggctcgcggccgtcacgtcgggcggcacgattcccgacaacgccgactacgcggtg
ctgctcgagccgcagggcgtgaacatcggcaccgtcaacgaggatttcgcggtcgagagc
ctcgcgggcgacgtgttccagctcggcaaccagtcgtaccggatcgtccgggtcgagacg
gggcgcgtgcgcgtcgaggatgcgcacgggcaggcgccgaacatcccgttctggctcggc
gaggcgcccgcgcgcagcgacgagctgtcggcgggcgtcgcgcggctgcgcgcgcatgtc
gacgcgctgctggcgcgtggggatgcgcgtggggatgcgcgcggcgcggacgatagcgcg
gatgtggtcgatgtcgatgcgcagaacgtcggtgcggcggtcgcgatcggccgcgtttcg
cgcacgggcgatgacgcgcggcatgctcggccgaacgcgccgtcagcctcgcgcgtgacg
gcgagcgcgcgccgcgatgcgccgctcgcgcgtgccgatacgccggcgtctctaacccga
acgcggccgcgcgcggaaaccggctcgccgccgcccggcaaagccgccgctaccggcgcg
tgcgccgcgccgcccgccgacgcacgcacgccgcctgcccgcgacggcgaggccgcccct
ttcgcgcaagacggcaggccagtcgccgccgcggacaccaccggccacgacgcgtcgctc
ggtcgcgacgccgccccgcgccccgcgccggctgctgcgtcgctgcccgccgccgcatcc
gccgaaaccgcgccgtccgaaaccgcgccgtccgaagccgcccccgaaccgcgccgactc
gcgcccgtgctcgcgtggctgacgggcgagctcggcctcgacgccgaagccgcacggcag
atcgccgactacctcgcgcgcgcccgcgcggcgctcggcgcgctgccgacgcaggacacg
ctcgtgatggagcgcttcttcgacgaatcgggcggcatgcagctcgtgatccactcgccg
tttggcaaccggatcaaccgcgcgtggggcctcgcgctgcgcaagcgcttctgccgcacg
ttcaacttcgagctgcaggcggccgcgaccgacgatgcgctgatcctgtcgctgtcgctc
gcgcacagcttcgcgctcgacgaagtgtggcgctacctgcgctcggcgagcgccgaacac
gtgctgatccaggcgctcctcgacgcgccgctcttcaatgcgcgctggcgctggaacgcg
acgacgtcgctcgcgctgccgcgcttcgcgggcggccgcaaggtcgcgccgcagttgcag
cggatgaagagcgacgatctgctcgcgaccgtgttccccgatcaggtcgcgtgcgcggag
aacatcgtccgcgagcgcgaagtgccgaagcacccgctcgtcgaccagacgctcgacgac
tgcctgcacgaagcgatggacaccgacggctggctcgcgctgctgcggcggatcgagtcg
ggcggcgtcgcgctcgtcgcgcgcgatttgcccgcgccgtcgccgctcgcggccgagatc
ctcaacgcgaagccttacgcgttcctcgacgacgcgccgctcgaagagcgccgcacgcag
gccgtgctcgcgcggcgctggaccgatccggaagcggccgacgatctcggcgcgctcgac
gcgggcgcgatcgatgcggtgcgcgacgaagcctggccgctcgtgcgcgacgacgacgag
atgcacgacgcgctcgtcggcctcgcgtgcgtgtccgacggcgaaatcgacgcgaacgac
ggctggcgcgcatgcgccgagcggctcgcggcccgcaagcgcgccgcgcggctcgcgctc
gcggacggccgcggactgtggctaccggccgagcgcgtcgcgtgcatgcgcgcgctgtac
ggcggcgacgcggcgctcgagccgccacccggcttcgacgcgccgtgggcgcccgacgcg
gcgctcgtcgacgtgatccgcgcgcggctcacgggcttcgggccgctgacggccgacgcg
ctcgcggcgccgctcgcgctgcccgcgtcgtcggtcgcgatcgcgctcgccgcgctcgag
cgcgaaggctatgcgatgcgcggccgcttcacgccgggcgcgcgcgacgacgaatggtgc
gagcggcacctgctcgcgcgcattcaccgctatacggtcaagcgcctgcggcgcgagatc
gagcccgtcgagctcgcggacttcatgcgcttcctgttccactggcagcgcgtcgcgccc
gacacgcgcggaatgggcgtcgacgcgctcgcgtcggtcgtccatcagctcgagggcttc
gaggcggccgcgagcgcatgggaggacgagctgctgcccgcgcggctcgccgactacgtg
acgggcggcctcgacgagccgtgccgcgcgggcaagctcacgtgggcgcggctcggcgcg
ccggcgaaggccgcgagcgtgcccgtgaagacgacgcccgtcgtgctgctgccgcgccgc
gagctcgccgtctggcaggcgctgcgcgatccggccgcccagccggcgctgtccgcgcgc
gcggagcgcgtgcgcgcgacgctcgccgcgtacggcgcgatgttcttcgacgagctcgtc
gcgcacgcgcgcttgttgcccgtcgagctcgaacgcgcgctcggcgagctcgtcgcggcg
ggcctcgtcaacgcggacagcttcgcgggcctgcgcgcgctgatcaagccggccgcgcag
cgcagcgcgcaccggtcgtcgcgcgcgcggcgcggcggcgcgctgatcggcgggatggac
gacgcgggccgctgggcgctcgtccagcggctgccgctgacgcgcgccgatttcggcgac
gacgaagacgcgctcgaagacgtcgagaacggcggcggcatcggcgtcgctcgccgtctc
gacgatccggacgccgtcgcgctcggcgacgcgcgcgtggcgcgcgcgatgcgcgccgca
ccgccgccgtcgggccgccatgcgatcgcgccggccgcgctcgagcacgtcgcgcgaacg
ctcttgcgccgctacggcgtcgtgttctggcggatcctcgcgtgcgaagccgaatggatg
ccgagctggcgcgagctgctgcccgtctatcggcggctcgaggcgcgcggcgagatccgc
ggcggccgcttcgtcgcgggcctcgcgggcgagcagttcgcgctgcccgacgcgatcccg
atcctgcgcgagctccgccgccggccggccgaggggctgatgctgtgcgtgagcggcgcc
gatccgctcaatctgacgggcacgctgctgccgggcgaccgcgtgcccgcgctcgcgggc
aaccggattctgttccgcgacggcgtgccgatcgcgtcgctcgtcggcggacagttcgtc
tatgcgcgcgagctcgacgccgccgagcaggacgacgcgcgcgcgaggctcgcgcggcat
cgatga

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