Cytobacillus oceanisediminis: A361_01940
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Entry
A361_01940 CDS
T04330
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bon
Cytobacillus oceanisediminis
Pathway
bon03030
DNA replication
bon03410
Base excision repair
bon03420
Nucleotide excision repair
bon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A361_01940 (ligA)
03410 Base excision repair
A361_01940 (ligA)
03420 Nucleotide excision repair
A361_01940 (ligA)
03430 Mismatch repair
A361_01940 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bon03032
]
A361_01940 (ligA)
03400 DNA repair and recombination proteins [BR:
bon03400
]
A361_01940 (ligA)
Enzymes [BR:
bon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A361_01940 (ligA)
DNA replication proteins [BR:
bon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A361_01940 (ligA)
DNA repair and recombination proteins [BR:
bon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A361_01940 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A361_01940 (ligA)
MMR (mismatch excision repair)
DNA ligase
A361_01940 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A361_01940 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AND37955
UniProt:
A0A161IWR7
LinkDB
All DBs
Position
366773..368779
Genome browser
AA seq
668 aa
AA seq
DB search
MDLQLAEKKVKDLHNLLNQYNYEYHVLDQPSVPDAEYDRLMRDLIELEEQFPELKTEDSP
TQRVGGEILDMFEKVEHQSQMLSLGNAFSEQDLRDFDRRVRQGAGENVSYVCELKIDGLA
VSLRYEDGLFTLGATRGDGSIGENITANLKTIRSIPLRLKESVTMEVRGEAFMPRRSFEK
LNKAKEENGEEPFANPRNAAAGSLRQLDPRLAAKRNLDIFVYGIANVGDTGVVSHSEGLD
YLDSLGFKTNKERKRCESIEEVIEYVQGWTDKRPNLSYDIDGIVIKVDSLESQEQLGTTA
KSPRWAIAYKFPAEEVVTTLRDIELSVGRTGVVTPTALLEPVRVAGTTVQRASLHNEDLI
REKDIKIGDQVVVKKAGDIIPEVVNVLADRRTGEEQDFNMPTHCPECESELVRLDGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFAENLIKDVADIYKLTYEQLIQL
ERMGEKSVNNLIQAIENSKGNSLEKLLFGLGIRHVGAKAAKTLAQEFGHMEALEKASRDN
LTAINEIGEKMADSIVSFFDQEEAHELIAELKAAGVNMAYNGPKPVSAENSDSFFAGKTV
VLTGKLEIMSRNEAKEKIEALGGKVSGSVSKKTDVVIAGEEAGSKLTKAQELGVEIWNEE
RLVEELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaccttcaattggcagaaaaaaaggtgaaagatctgcacaaccttttgaatcagtat
aattatgaataccatgttcttgatcagccgtctgttccagatgctgaatacgatagactg
atgagggacctcattgagcttgaagagcaatttcccgagctgaaaacagaagactctcca
acacagcgggttggaggggaaatccttgatatgtttgaaaaggtggagcatcagtcacaa
atgctcagtttgggcaatgccttcagtgagcaggacctaagagactttgaccgccgtgtc
cgccagggtgcaggtgaaaatgtttcttatgtatgcgaattgaaaatcgatgggctggct
gtctccctccgttatgaggatgggctttttactctcggtgccacacgcggggacggatcc
atcggtgaaaatatcacagcaaatttaaagaccattcgctctatccctctccggctgaaa
gagagtgtcacgatggaagtgcgcggtgaggcattcatgccaaggcgttcttttgaaaaa
ttgaataaagcgaaagaggagaatggggaagagcctttcgcaaacccaaggaatgccgca
gcaggttcattaaggcagcttgatccgcgtctggcggcaaagcgaaatctcgatattttt
gtctacggcatagcgaatgtaggggatacaggcgttgtatcccatagcgaaggtctggat
tatctggatagccttggatttaaaacgaataaagaacgcaaaagatgtgaaagcatcgag
gaagtcattgaatatgtacagggatggactgacaaacgtccaaacctgtcttatgatatt
gatggcatcgttattaaagtcgattcacttgaatcacaggagcagcttggcactacggca
aaaagcccacgctgggccattgcttataaattccctgcagaagaggttgttaccacatta
agggatattgaattaagcgttgggcgaactggagtagttacgccaactgcacttctggag
cctgtccgtgttgccggaacgactgttcaaagggcgtcactgcacaacgaagatttaatt
cgcgaaaaagatattaagattggcgatcaggtcgttgtgaaaaaagcaggagatattatc
cctgaagttgtaaatgtactggctgacaggagaacgggtgaggagcaggattttaacatg
ccgacacattgccctgagtgtgaaagcgaactggtccgccttgatggtgaagtggcattg
cgctgcattaatccaaagtgcccggcccagatcagggaaggcctaattcactttgtatcc
cgcaacgccatgaacattgatggccttggtgaaaaggtgatcagccaattatttgccgaa
aatctgattaaagatgtggcagatatctataaattaacgtatgaacagctcatccagctc
gagaggatgggtgaaaagtcagtaaataacctcattcaggcaattgaaaactccaagggc
aactcattggaaaagcttttatttgggctggggatccgccatgttggcgcaaaggcagcc
aagacgctggcccaggagtttggccatatggaagcacttgaaaaagcatcccgggacaat
ttaacagctatcaatgaaattggtgaaaaaatggctgattccatcgtttccttctttgat
caggaagaagcccatgaactgattgcggagctgaaagcagctggggtcaacatggcttat
aatgggccaaagcctgtttcggccgaaaactcggatagtttttttgcaggaaaaacagtg
gttctgacaggaaagcttgaaataatgagccggaatgaagcaaaagaaaaaatagaggcg
ctaggcggtaaagtatccggaagcgtcagcaagaaaacagatgttgtaatcgccggagaa
gaggctggatccaaactgacgaaggcccaggagcttggagtagagatttggaacgaggag
agactggttgaagaattaaataagtaa
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