KEGG   Cytobacillus oceanisediminis: A361_18415
Entry
A361_18415        CDS       T04330                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bon  Cytobacillus oceanisediminis
Pathway
bon03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bon00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    A361_18415
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bon03400]
    A361_18415
Enzymes [BR:bon01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A361_18415
DNA repair and recombination proteins [BR:bon03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A361_18415
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AND41038
UniProt: A0A160MEP7
LinkDB
Position
3664505..3666343
AA seq 612 aa
MRPMLPTLTFDVPEEKEWLFEAKYDGFRAILHLDKEPRLTSRNDKPLLHIFPEIKDFLEQ
NKDKFEPYLPLTLDGELVFLENAYKAHFGSIQVRGRMRSEKKIQEKAKTAPCRLLIFDIL
MVKGKKMTDKEYFTRKAELEALFKDCNMPLKPDEKDPRLIQLIPPYRSFNELWEQIVLHD
GEGIVAKQLKNKWEEGKRSSLWLKFKNWKYVNCFITAYEKSNGYFYAGVFQGDAVIAIGQ
FLFGLKPDEKQALFQIIKDNKTDENSQFIYVEPAICVEVKYLEIYEDQMREPHFHQFRFD
LKPDACTYEKFIQQQKNLPPEIEITHPDKPLWETPAIQKIDYIHFLREIAPYMLPFLKKR
LLTVIRYPHGIFAEPFYQKNCPDYAPDFVETEMSEGINYIVCNNLQTLLWLGNQLAFEYH
IPFKTIYSNDPSEIVFDLDPPSRDAFHLAIKAAILIKEVLDQLKLISFVKTSGNKGLQIY
IPLQENTYSFDDTRLFTEFIAQYLISKDPDSFTIERLKKNRGGRLYVDYIQHAEGKTIIA
PYSARGNKAATVAAPLFWEEVNEKLTMERFQITNLIKRVNSDGDPFSSYFQTKENQPFSP
VLDFLKQENKKG
NT seq 1839 nt   +upstreamnt  +downstreamnt
atgagaccaatgcttccaaccttaacttttgatgttccggaagagaaggaatggctcttt
gaagcgaagtatgatggttttagagcaatcctgcacttggacaaggaacccagactgaca
agcaggaatgataagcctttattacatattttcccggaaattaaggattttttggagcaa
aacaaagataaattcgaaccataccttccacttacactagatggagaattagtctttctg
gagaatgcctataaagcccattttgggtccatccaggtcaggggcaggatgaggtctgaa
aagaaaattcaagagaaggcaaaaactgcgccatgccgtcttcttatttttgacattttg
atggtaaaaggcaaaaaaatgaccgataaagagtactttaccagaaaagcagaactggaa
gctttgtttaaggattgtaatatgcccttaaaacctgatgagaaggatccgagattgata
caattaatccctccataccgcagctttaatgaactttgggaacaaattgtcctgcatgat
ggtgaaggaatcgtggcaaagcagttgaagaataaatgggaagaaggaaagagatcatct
ttatggcttaaattcaagaattggaaatacgttaactgctttatcaccgcatatgaaaaa
tcaaatggctatttttatgctggtgtattccagggggatgctgtcatagcaatcggacag
tttctttttgggttgaagcccgatgaaaaacaagccttattccaaatcatcaaagataat
aaaacagatgaaaacagccaattcatttatgtagaaccagcaatatgtgtggaagttaaa
tatctggagatttatgaggatcaaatgcgcgaaccgcattttcaccagtttcgtttcgat
ttgaagcctgatgcctgcacttatgagaaatttatacaacagcagaaaaacctgcctccc
gaaatagaaatcacccatccagataagccattatgggaaacaccagctattcaaaagatt
gattacattcactttttaagagagattgctccatatatgctgccatttttaaagaaaagg
cttttaactgtaatccgctacccgcatgggatctttgctgagcctttctaccagaaaaat
tgcccggattacgcaccggattttgtagaaactgaaatgtctgaaggcatcaattatatt
gtctgcaataatcttcaaacactgctctggcttggcaaccagcttgcatttgaatatcat
atcccatttaagaccatttacagcaatgatcccagcgaaatagtgtttgatttagatcct
ccttcgagggacgcttttcatcttgccattaaagctgcaatattgattaaagaggtgctt
gatcagctgaaattaatcagctttgtcaaaacatccgggaataaaggtctgcaaatctat
atcccgctgcaggaaaatacctatagctttgatgatactcggctgttcaccgaatttatt
gcccagtatctaatttccaaagatcccgattcttttacaatagaaagattaaagaaaaat
cgcggaggccggctttatgtggattatatccagcatgcagaaggcaagacgatcattgcc
ccttattcagcaagaggaaataaagcagcaactgttgctgctcctctgttttgggaggaa
gtcaatgagaaactcacaatggagcggtttcagataaccaatcttataaaaagggtaaac
agcgatggcgatccattcagttcttattttcagacaaaggaaaatcagcccttttctcca
gtgctcgattttttaaaacaggaaaacaaaaaaggataa

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