Cytobacillus oceanisediminis: A361_18415
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Entry
A361_18415 CDS
T04330
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bon
Cytobacillus oceanisediminis
Pathway
bon03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A361_18415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bon03400
]
A361_18415
Enzymes [BR:
bon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A361_18415
DNA repair and recombination proteins [BR:
bon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A361_18415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AND41038
UniProt:
A0A160MEP7
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Position
3664505..3666343
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AA seq
612 aa
AA seq
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MRPMLPTLTFDVPEEKEWLFEAKYDGFRAILHLDKEPRLTSRNDKPLLHIFPEIKDFLEQ
NKDKFEPYLPLTLDGELVFLENAYKAHFGSIQVRGRMRSEKKIQEKAKTAPCRLLIFDIL
MVKGKKMTDKEYFTRKAELEALFKDCNMPLKPDEKDPRLIQLIPPYRSFNELWEQIVLHD
GEGIVAKQLKNKWEEGKRSSLWLKFKNWKYVNCFITAYEKSNGYFYAGVFQGDAVIAIGQ
FLFGLKPDEKQALFQIIKDNKTDENSQFIYVEPAICVEVKYLEIYEDQMREPHFHQFRFD
LKPDACTYEKFIQQQKNLPPEIEITHPDKPLWETPAIQKIDYIHFLREIAPYMLPFLKKR
LLTVIRYPHGIFAEPFYQKNCPDYAPDFVETEMSEGINYIVCNNLQTLLWLGNQLAFEYH
IPFKTIYSNDPSEIVFDLDPPSRDAFHLAIKAAILIKEVLDQLKLISFVKTSGNKGLQIY
IPLQENTYSFDDTRLFTEFIAQYLISKDPDSFTIERLKKNRGGRLYVDYIQHAEGKTIIA
PYSARGNKAATVAAPLFWEEVNEKLTMERFQITNLIKRVNSDGDPFSSYFQTKENQPFSP
VLDFLKQENKKG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgagaccaatgcttccaaccttaacttttgatgttccggaagagaaggaatggctcttt
gaagcgaagtatgatggttttagagcaatcctgcacttggacaaggaacccagactgaca
agcaggaatgataagcctttattacatattttcccggaaattaaggattttttggagcaa
aacaaagataaattcgaaccataccttccacttacactagatggagaattagtctttctg
gagaatgcctataaagcccattttgggtccatccaggtcaggggcaggatgaggtctgaa
aagaaaattcaagagaaggcaaaaactgcgccatgccgtcttcttatttttgacattttg
atggtaaaaggcaaaaaaatgaccgataaagagtactttaccagaaaagcagaactggaa
gctttgtttaaggattgtaatatgcccttaaaacctgatgagaaggatccgagattgata
caattaatccctccataccgcagctttaatgaactttgggaacaaattgtcctgcatgat
ggtgaaggaatcgtggcaaagcagttgaagaataaatgggaagaaggaaagagatcatct
ttatggcttaaattcaagaattggaaatacgttaactgctttatcaccgcatatgaaaaa
tcaaatggctatttttatgctggtgtattccagggggatgctgtcatagcaatcggacag
tttctttttgggttgaagcccgatgaaaaacaagccttattccaaatcatcaaagataat
aaaacagatgaaaacagccaattcatttatgtagaaccagcaatatgtgtggaagttaaa
tatctggagatttatgaggatcaaatgcgcgaaccgcattttcaccagtttcgtttcgat
ttgaagcctgatgcctgcacttatgagaaatttatacaacagcagaaaaacctgcctccc
gaaatagaaatcacccatccagataagccattatgggaaacaccagctattcaaaagatt
gattacattcactttttaagagagattgctccatatatgctgccatttttaaagaaaagg
cttttaactgtaatccgctacccgcatgggatctttgctgagcctttctaccagaaaaat
tgcccggattacgcaccggattttgtagaaactgaaatgtctgaaggcatcaattatatt
gtctgcaataatcttcaaacactgctctggcttggcaaccagcttgcatttgaatatcat
atcccatttaagaccatttacagcaatgatcccagcgaaatagtgtttgatttagatcct
ccttcgagggacgcttttcatcttgccattaaagctgcaatattgattaaagaggtgctt
gatcagctgaaattaatcagctttgtcaaaacatccgggaataaaggtctgcaaatctat
atcccgctgcaggaaaatacctatagctttgatgatactcggctgttcaccgaatttatt
gcccagtatctaatttccaaagatcccgattcttttacaatagaaagattaaagaaaaat
cgcggaggccggctttatgtggattatatccagcatgcagaaggcaagacgatcattgcc
ccttattcagcaagaggaaataaagcagcaactgttgctgctcctctgttttgggaggaa
gtcaatgagaaactcacaatggagcggtttcagataaccaatcttataaaaagggtaaac
agcgatggcgatccattcagttcttattttcagacaaaggaaaatcagcccttttctcca
gtgctcgattttttaaaacaggaaaacaaaaaaggataa
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