Bipolaris oryzae: COCMIDRAFT_100336
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Entry
COCMIDRAFT_100336 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
bor
Bipolaris oryzae
Pathway
bor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCMIDRAFT_100336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_100336
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
COCMIDRAFT_100336
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
COCMIDRAFT_100336
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Gal_mutarotas_2
WKF
EAD9
Chal_sti_synt_C
DUF948
DUF1192
CorA
Motif
Other DBs
NCBI-GeneID:
19117656
NCBI-ProteinID:
XP_007689848
JGI:
Cocmi1_100336
UniProt:
W6YW68
LinkDB
All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MAARKLQQEIDKCFKKVAEGVATFESIYEKIMQTGNPSQKEKLEDQLKKEIKKLQRSRDQ
IKTWAAMSEIKDKKPLLDHRKLIETQMERFKAVEKEMKTKAYSKEGLQLASKIDPKDREK
MEVVEFLQHMNEELERQIETIEAEIETLNANVKKSKKGDNSKVERVSELEESVERNKWHQ
SKLELLQRALENGSVETEQVKEIEDSIKYYVESNQDPEFMDDDTLYDDFNLQEEEAIYGL
GENLDHVSSHESQSIADDTPDTEVRPPAPKPKATEAVQQGARRSSTQMKSPLPALATLHT
PSPNAANNTANAMKPAPIPTRTPGEPLKYASAAAAAAASDRNGVGIAPLPPPPGAAAVQP
SLAAGGARASATSSPAITHSQPASRAQQAESAQASPVPTASVPATAPVEKDPPLQAAVSD
DVSKASTRTPVPEPVEEEESQATTPPLTNGESHAEDEDEESVYHLPSSLQDLLDSFEATK
NDISASASKPPDERMLMASMATAPESADTEAPRHYRPQNPYPFTPAHYPQEPLPIFDDPR
LYSRIETDALFYAFYYRQGTYQQYLAAKALKSQSWRFHKQYQTWFQRHEEPKAITEDYEQ
GTYRFFDYESTWMNRRKADFRFAYKFLEDEL
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacggaaactccagcaggagatcgacaagtgcttcaaaaaggtcgccgaaggc
gtcgcgaccttcgagagcatatacgagaagattatgcagacgggcaatccgtcgcagaag
gagaagctcgaagaccagctgaagaaggagatcaagaagttgcagcggtcgcgggaccag
atcaagacatgggctgccatgtctgagatcaaggacaagaagccgctactcgaccacagg
aaactcatcgagacacaaatggagcgcttcaaggccgtggaaaaggagatgaagacaaaa
gcatattccaaggaaggcctccaattagcctccaagattgacccaaaggacagagaaaag
atggaagtggtcgaattcttacagcatatgaacgaagagctcgaacggcaaatagagacg
attgaagctgaaatcgagacgctgaacgccaatgtcaaaaaatcaaagaagggcgacaat
tcaaaggtggagcgcgtgtcggagctggaagagtcggtggagcggaacaaatggcaccaa
tccaaactggagctacttcaacgagcactggagaatggtagcgttgagacggaacaggtc
aaggagattgaggacagcatcaagtactatgtcgaaagcaatcaggaccccgagttcatg
gacgacgacacattatacgacgacttcaatctacaagaggaggaagctatctacggtcta
ggcgagaatctggaccatgtgtcgtcacacgaatcgcaatcaatagctgacgatacaccc
gacacagaagtacggccgccggcaccgaaaccaaaggcgaccgaagcagtgcaacaagga
gcaagacggtcgtcaacacagatgaaatcgccattaccagcgctagccacactgcatacg
ccctcgcccaatgctgcaaataatacggcaaatgctatgaagcctgcaccgataccaaca
cgaacaccaggagagccattgaagtatgcatcggctgctgcggctgcggctgcgagtgat
aggaacggagttggcattgccccgctgccaccaccaccaggagctgctgcagttcaacca
agtctcgctgctggcggtgcacgtgcaagtgcaacaagctcacccgccataacacattcc
caaccagcctcgcgtgcacagcaggccgaatctgcacaggcctcacctgttcctactgct
agcgtacctgcgaccgctcctgtggagaaggacccacctttgcaagctgcagtgtctgat
gacgtctccaaagccagcacaagaacgcctgtccccgagcctgtcgaagaagaggaatcc
caagctactacgccgccattaaccaacggagaatcgcatgcagaagatgaagatgaagag
tcggtctatcatctcccctccagtcttcaggatctgcttgattcgttcgaggcaaccaag
aacgatatttctgcctcagcatcaaaacccccggatgagcgtatgctaatggcatcaatg
gctactgcgcccgagtctgcagatactgaggcgccgcgtcactaccgccctcagaaccct
tatccattcacccctgctcactacccgcaagagcccttacccattttcgacgaccctcgt
ctatattcccgcatcgagacggacgctcttttttacgccttctattaccgccagggtaca
tatcaacagtacctagccgccaaagcattgaagtcacagagttggaggttccataagcag
taccagacatggtttcaacgccacgaagaaccaaaagcaattactgaagattatgagcag
ggaacataccgattcttcgactatgaaagcacatggatgaaccgtagaaaggcagacttc
cgatttgcgtacaagtttttggaagacgagctataa
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