Bipolaris oryzae: COCMIDRAFT_106760
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Entry
COCMIDRAFT_106760 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K15542
polyadenylation factor subunit 2
Organism
bor
Bipolaris oryzae
Pathway
bor03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
COCMIDRAFT_106760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_106760
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
COCMIDRAFT_106760
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
MIOS_WD40
eIF2A
NBCH_WD40
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
19118915
NCBI-ProteinID:
XP_007692276
JGI:
Cocmi1_106760
UniProt:
W6YUK3
LinkDB
All DBs
Position
Unknown
AA seq
679 aa
AA seq
DB search
MEREYHRPEFEGGLRPRPKRAVTDYGSTTVQWMRNRRPRYKNMPRPEVERPSASYIVDMQ
PPAARIASAAESIPAKAVHSSLNKVKHPINVVKWTPEGRRLLTGSTSGEFTLWNGMGFNF
ETIMQAHEAAIRAVEYTSTDDWLLSADQTGVVKYWQTNFNNVKEIQAHTEAVRGLAIAPT
DSKFVTCADDTTLKIWDFASSTEESTLTGHGWEVKSVDWHPHKGLLVSGSKDHQVKFWDP
RTGRCLTTLHGHKNPISKTMFEPVQGNMLATCARDHTARIFDIRMMRDVLLLKGHEKDII
TMAWHPMHKNLLSTGGVDGSIHHYLLDEQNPPPGVPPSISPYDAADSQNAPSQTIYPAHS
LQYAHDFTVWTMDWHPLGHILASGSNDRVTRFWTRPRPGDTNYINDRYHIGQAAAEAQGT
FDRSQGRRQKMEEEEQEAEDEAEGLVDQKLPSRNMVGAPFLPPGLSLPGLSAPSDGTSSA
LPGIGGASQHSIHPPPPPPPPAGMPFPPQPNASGAPIPPPFSGMDPSHIAQLIASGSLPP
PPLPHGHGPPPPHGGNATAPPPFPPPPNFPGFPQGMPPGMPPLPHGMPPPGFPGFPPPPP
PGGLGNAAPPPGWPGQLPVQQPQQQQQQQQQQQQQGFGGGGGQGGAAGGDGLVRKRAPLP
DQQDALKAEMSQGRYRKAR
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcgagtaccatcgccccgaattcgaaggcggcctgcgtccccgaccgaaacgt
gccgtcactgactatggctcgacaacggtgcaatggatgcgcaatcggcgcccacggtac
aagaacatgcccagaccagaggtggagcggccgagtgcaagctacattgtcgatatgcag
cctcctgcagcgcgcatcgccagtgctgccgaatccatacctgcaaaggcggtacattcg
tcgctcaacaaagtaaagcatcccatcaacgtagtcaagtggacgccagaggggcggcgc
ttgctcacaggctcgactagcggcgagttcacgctgtggaatggcatgggcttcaacttt
gagaccattatgcaggctcacgaggcggctattcgcgctgtcgagtacacctctaccgac
gactggctgctgtctgccgaccagaccggcgtcgtcaagtattggcagaccaacttcaac
aacgtcaaagagatacaggcgcacacagaggctgtgcgggggctcgccatagctcccact
gactccaagtttgtcacatgcgccgacgataccacactgaagatctgggactttgcgtca
agtaccgaagagtcgacgctgacaggacatggatgggaagtcaagtcggtcgactggcat
ccgcacaaggggctgttggtatcgggatcaaaggatcaccaggtcaagttctgggatccg
cggacaggccgctgtctgacgacacttcatggacataaaaacccaatatcaaaaaccatg
ttcgagcctgtccaaggaaacatgctagcaacctgcgcccgtgatcacaccgcccgcatc
tttgatatccgaatgatgcgcgatgtcttactgctcaagggtcatgagaaagatatcatt
acaatggcgtggcaccccatgcacaagaacctgttgtctacgggaggtgtagatggcagc
attcatcattacctcctcgacgagcagaaccctcccccaggtgttccgccgtcaatatca
ccctatgatgctgcagactcgcaaaacgccccttcgcaaactatatatcccgcacacagc
ttgcaatacgctcacgactttacggtctggaccatggactggcatccgctcggccacatc
ctcgcctctggctccaatgaccgtgtcactcgtttctggacacgcccccgacctggcgat
acaaactacatcaacgatcggtaccatattggccaagccgcggcagaagcccagggtacc
tttgaccgcagccaaggccgacgacagaagatggaagaagaagaacaggaagcagaggat
gaagcagaaggcctggttgaccagaaactcccgtctaggaacatggtcggtgcgcccttc
cttcccccaggtctctcacttccaggactctctgcaccatcagatggcacttcaagcgct
ctcccaggcattggtggtgcaagccaacattctattcatcctcctccgccaccacctcca
ccggcaggaatgcctttcccgccccaaccaaacgcaagcggcgcacccattcctcctccc
ttctcaggcatggacccatctcacattgcccaactcattgcctctggctctctgccgcct
cctccgctcccccacggccacggcccgcctccacctcatggcggaaacgctactgctcct
cctccgtttcctccacccccgaatttccctggtttcccacagggaatgccaccgggtatg
ccgcctcttccccacggcatgcctcctcctggtttccctggctttccgcctccgccacct
cctggtggattgggcaatgctgcgccgccgcccggatggcctggccaactcccggtgcaa
cagccgcagcaacaacagcaacaacaacaacagcagcagcagcaaggatttggaggtgga
ggtgggcaaggtggtgcagcaggcggcgatggtctggtaaggaagagagcgccattaccg
gatcagcaggatgcgttgaaagcagaaatgagtcaggggaggtataggaaggcgaggtaa
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