Bipolaris oryzae: COCMIDRAFT_87215
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Entry
COCMIDRAFT_87215 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K10754
replication factor C subunit 1
Organism
bor
Bipolaris oryzae
Pathway
bor03030
DNA replication
bor03410
Base excision repair
bor03420
Nucleotide excision repair
bor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COCMIDRAFT_87215
03410 Base excision repair
COCMIDRAFT_87215
03420 Nucleotide excision repair
COCMIDRAFT_87215
03430 Mismatch repair
COCMIDRAFT_87215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bor03032
]
COCMIDRAFT_87215
03400 DNA repair and recombination proteins [BR:
bor03400
]
COCMIDRAFT_87215
DNA replication proteins [BR:
bor03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
COCMIDRAFT_87215
DNA repair and recombination proteins [BR:
bor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
COCMIDRAFT_87215
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
AAA_16
AAA_22
AAA_33
RuvB_N
nSTAND3
AAA_18
AAA_14
AAA_28
BRCT_2
NACHT
AAA_5
RNA_helicase
AAA_11
Motif
Other DBs
NCBI-GeneID:
19127008
NCBI-ProteinID:
XP_007684975
JGI:
Cocmi1_87215
UniProt:
W6ZXF3
LinkDB
All DBs
Position
Unknown
AA seq
1075 aa
AA seq
DB search
MPADIRSFFGGGPPKSSQGSQKDEPAPKKAAPKKKGRTSRVKPAAKKAKREPTPEPELEE
TTTSAFFGSSNKPKRTEPVKKKAAEAPKTTPKKAAAKPSGKAANGKTSGRAKKPVTSYAE
RDDDDEFPDDDLDGADDIFGDDIKGKSKDDYQEASESDEDVPIQLPHRGTPKAPAKQQKP
VKDEDEDEDEFEPDDEDVDMKDVDGDDDEDFDEEEAAKTKSKKVSAASKKRKSPEHDEDE
DEEDKPAKPKAKKAAPAKSPAKKKAKKDDVEDSADIQAIYDSIPTVRAPTPPPKDPNGKF
NWQANAARGDAGPAQGSSADMPQGSDTCLAGLNFVFTGVLQKWGRTESQELVKRHGGKVT
TAPSKKTNYVVLGEDAGPSKLQKIRDMNIKTIDEDGLTLLIEKLTAAGNKGDSKAQAVHA
EKQRKEQEKIEKQAAELEAEEKKRQKELKTAAAAAAAAGNKTASAVTAAAQSVGPEVDSR
LWTTKYAPTSLAHICGNKASVERLQRWLQAFPKSLKTGFKLAGKDGSGVFRAVMIHGPPG
IGKTTAAHLVAKLEGYDIVERNASDTRSKKLIEDGLRGVLSTNSLHGYFAGDGKKVENSK
KKLVLIMDEVDGMSAGDRGGVGALAAVCKKTEVPMILICNDRRQPKMKPFDYVTFDLPFR
RPTVDQVRSRIMTIAFREGLKMPTPVINALIEGSHSDIRQVVNMISTAKIDQEVMDFDKG
KAMSKNWEKHVVLKPWDITQKILGGGMFAASSKATLNEKIELYFNDHEFSPLMLQENYLG
TNPILSGGYSGKEKNLKNLELVSQAADSISDGDLVDRMIHGSQQQWSLMPTHAVFSFVRP
ASFVAGNTAGNQTRFTSWLGKNSSANKLSRMVKEIQAHMRLRSSGDRHEIRQQYIPMLWT
DLVQKLQKEGKEAVPEIIELMDSYYLTKDDFDAIMELGVGPMDQEKVKIDSQAKSTFTRL
YNQQSHPLPFMKASSVTAPKKQAKEKPDLEEAIEESDEGEVIEEIKDEDDEDIDLSKDKY
VKQPKKKAAPKKPAAAKKGAKKKAKDEDSEDEDEEDVKPKGKGKGKAKAPGKGKK
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgatattcgcagcttctttggtggtgggcccccgaagtctagccagggttct
caaaaggatgagcccgcacccaagaaggcggcacctaagaaaaaaggccgtacgagcaga
gttaaaccagccgctaagaaagccaaacgtgaaccaacgccagagcctgaactcgaagaa
acaaccacatctgcatttttcggtagctcgaataagcccaagcgaacagaacctgtaaaa
aagaaggcagccgaggcaccaaagacaacaccaaagaaggcagctgcaaagccaagtggg
aaggcagccaatggcaagacttctggacgcgcgaagaaacctgtcacatcatacgctgag
agggatgacgacgatgagtttccggatgatgatctcgacggtgcggacgatatctttggg
gatgacatcaagggtaagagcaaggacgattaccaggaggcttcagagagtgacgaggat
gtgcccatacaactgccacatcgtgggacaccaaaggctccagcaaagcaacaaaagcca
gtcaaagacgaggacgaagacgaggacgaatttgagcccgacgacgaggatgtggatatg
aaggatgtggatggtgacgacgacgaagactttgatgaggaagaagctgctaagaccaaa
tcgaagaaagtatcggctgccagcaagaagcgcaagtccccagaacatgatgaagatgag
gacgaagaggacaagccggcaaaacctaaggcgaagaaggctgccccagcaaagtcacca
gcgaagaagaaggcgaagaaggatgatgttgaagatagtgctgacattcaggccatttac
gacagcatacctactgtgcgcgctccaacgcctcctcctaaagacccaaatgggaaattc
aactggcaagcaaatgcagcccgtggcgatgctggacccgcacaaggctcgtccgctgat
atgccacaaggctcagatacctgccttgctgggctgaacttcgtcttcactggtgtgttg
caaaaatggggtcgaactgaaagtcaggagctggtcaagcgtcacggcggtaaagtgact
accgctccgagcaagaagaccaattacgtcgtcttgggtgaagatgctggacccagcaag
ttgcagaagatccgagacatgaacatcaagaccattgatgaggatggcctgactctgcta
attgaaaagttgacagccgcgggcaacaagggtgacagcaaagctcaggcagtgcatgca
gaaaagcaacgcaaggagcaagagaagattgagaagcaggctgcagaactcgaggcagag
gaaaagaagcgtcagaaagaattgaagactgcagctgccgcagctgccgcagctggaaac
aagacagcctctgctgtcaccgctgctgctcaaagcgtaggtccggaagtcgactctcga
ttgtggacaaccaagtatgcacccacgtcacttgctcatatatgcggaaacaaagcatca
gtcgagaggctgcaacgatggctgcaggctttcccgaagagtctcaagacagggttcaag
cttgccggtaaagatggtagtggagtattccgtgctgtcatgattcatggaccgcctggt
attggtaagactactgctgcacatctcgtcgccaagcttgaaggttacgacattgttgaa
aggaacgccagtgatactcgaagcaagaagcttatcgaagacggtctgcgtggtgttctc
agtaccaactccctccacggctactttgcgggagatggaaagaaggtcgagaactctaag
aagaagctcgttctcattatggacgaggtcgatggtatgtctgcaggtgaccgaggtggt
gttggtgcactcgcagctgtttgcaagaagacggaagttcccatgatcctcatttgtaac
gaccggaggcagcccaagatgaagccattcgattacgtcaccttcgacctccccttccga
cgaccgactgtagaccaggtgcgatcacgtatcatgacgattgcgttccgtgaaggtctc
aaaatgcctaccccagttatcaatgcacttatcgaaggcagccattccgatatccgtcaa
gttgtcaacatgatatccactgccaagatcgaccaagaagtcatggactttgacaagggt
aaggccatgtcgaagaactgggagaagcatgtggttttgaagccctgggacatcacgcaa
aagattcttggcggtggcatgtttgctgcgagcagcaaggccactctcaatgaaaagatt
gagctctacttcaacgaccatgagttcagcccgctgatgcttcaggaaaactatctcggc
acgaatcctatcctgtctggaggctattctgggaaggagaagaacctcaagaacctggag
cttgtgtcacaggcagcggacagcattagtgatggcgatctggtcgatcgaatgattcac
ggatctcagcagcaatggagcctaatgcctacacatgcagtattcagttttgtgcggcca
gcaagcttcgtagctggcaacactgctggaaatcagacacgctttacatcgtggctgggc
aagaacagttctgccaacaagcttagtcgaatggtcaaggagatccaagctcatatgcgg
ctacgatcttctggtgatcgacacgagatccgtcagcaatacattccaatgctctggacc
gaccttgttcagaagttgcaaaaagagggcaaggaggcagtcccagagattatcgagttg
atggacagctactacctcaccaaggatgactttgatgcaatcatggagctgggtgttggt
cccatggaccaagaaaaggtcaagattgattctcaggccaagtcaacctttacccgacta
tacaaccagcaatcacatcctctgccattcatgaaggcttcgtcagtcacagcgccaaag
aaacaagccaaagagaagccggacttggaagaagcgattgaagagtcggacgagggcgaa
gtgattgaggaaatcaaggatgaagatgacgaagatatcgatctttctaaggacaaatac
gtcaagcagccgaagaagaaggctgcgcccaagaaaccggctgcggcgaaaaagggggcg
aagaagaaggccaaggatgaagatagcgaggatgaggatgaggaggatgtcaagccaaag
ggtaagggtaagggcaaggcaaaagctccaggaaagggaaagaagtga
DBGET
integrated database retrieval system
