Bradyrhizobium ottawaense: CIT37_12965
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Entry
CIT37_12965 CDS
T05524
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bot
Bradyrhizobium ottawaense
Pathway
bot03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CIT37_12965 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bot03400
]
CIT37_12965 (ligD)
Enzymes [BR:
bot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CIT37_12965 (ligD)
DNA repair and recombination proteins [BR:
bot03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CIT37_12965 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AWL93015
UniProt:
A0A2U8P5L0
LinkDB
All DBs
Position
610738..611685
Genome browser
AA seq
315 aa
AA seq
DB search
MARKSTLPLRLQPMLATLTDAPFDDPDWVFEDKFDGFRMVAEIRRGRVALYSRNGKIISH
SYVEVAKALEGAKSDAVIDGELIAIGKDGASHFQLLQNALRHEAKLLYCVFDLMFADGKD
LRALPLLERKKRLKAILPRHKLIAFSNHRKGNGTKFFAEAERKHLEGVMAKRADSPYASG
RRTADWLKVKTAQRQEVVIAGFTAPRRTRPFFGALVLAVREDDGWRYIGHVGTGFSHQVL
EELHGKLVKLKTAKSPFAAKVKDEQVTTWVRPSLVAEVKFAEWTSKGELRQPVYLGLRSD
KKAKDVIRERSWSRN
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaaagtcgaccttgcctcttcgcctgcagcccatgttggccacgctgacggat
gcgccgttcgacgatcccgattgggtcttcgaggacaagttcgatggtttccgcatggtc
gcggagatccggcgaggtcgggttgcgctctacagccgtaatgggaaaatcatcagccat
tcctacgtcgaggtcgcgaaagcgctagagggcgcgaagtccgacgccgtgatcgatggc
gagctcatcgcaatcggcaaggacggcgcatcccatttccagttgctccagaacgccctg
cgccatgaggccaagctcttgtactgcgtgttcgacctcatgttcgcggacggcaaggac
ctgcgagcgctgccgctcctggagcgcaagaagcggctcaaggccatcctgccgcgccac
aagctgatcgcgtttagcaaccaccgcaaaggcaatggaacgaagttcttcgcagaagcc
gagcgaaagcatctcgaaggcgtcatggccaagcgcgccgacagcccgtatgcctccgga
cgccggaccgccgactggctgaaggtgaagactgcgcagcggcaggaggtcgttatcgcc
ggcttcacggcgccgaggcgaactcggccgttcttcggcgccctcgtgctggccgtacgc
gaggacgacgggtggcggtacatcggccacgtcggcactggtttcagccaccaggttctg
gaagagcttcacggcaagctcgtgaagctcaagacggccaagtcgccctttgccgccaag
gtgaaggacgagcaggtcacgacctgggtgcgtccttcgttggttgcggaagtgaagttc
gccgagtggaccagcaagggcgagctgcgccagccggtctatctcggcctgcggtccgac
aaaaaggccaaggacgtcattcgcgaaaggagttggtcgcgaaactaa
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