Bacillus pacificus: LMD38_05035
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Entry
LMD38_05035 CDS
T07947
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
bpac
Bacillus pacificus
Pathway
bpac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LMD38_05035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpac03400
]
LMD38_05035
Enzymes [BR:
bpac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LMD38_05035
DNA repair and recombination proteins [BR:
bpac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LMD38_05035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_4
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
UvrD-helicase
AAA_22
DEAD
AAA_16
AAA
T2SSE
nSTAND3
AAA_12
AAA_18
AAA_29
AAA_28
TsaE
UvrD_C
DUF4926
Zeta_toxin
Rad17
AAA_7
NTPase_1
AAA_17
Motif
Other DBs
NCBI-ProteinID:
UEP95741
LinkDB
All DBs
Position
971999..974335
Genome browser
AA seq
778 aa
AA seq
DB search
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPR
MHEDEVFTLTGHFKDHPKYGKQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIV
DHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGLEKVMSFLNGYGFGTKLSIKI
YQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIEMMQSEGKVIIEEERVYLASLFY
SEKGVVKSIRRLMNQEETPSFPEAEVLKTLGEIEEQLSVQYAPLQQEAIQTALHKPMMLL
TGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPILLTAPTGRAAKRMSESTGLP
ACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQK
DRSFIGCTGAQIVEVVKKVCENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPK
REKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIVSVFYAKENVEQQDMIIVSFD
GIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatcaacatgcaatggatttgtttgaggaagagaaaaagtttataaaagcgcaa
gttcttcataccattttccacaacgaagaaaacctctattccgttgtcagtatgaaagtc
attgaaacgaatgaaacgtacgacgaaaaaaaagtgatgataaacggtcattttccccgc
atgcatgaagatgaagtgtttacgttgacagggcattttaaagaccatccgaagtatggg
aaacaatatttagttgaaacgtttaagaaagaattgccgcaaacaaaagcaggtatggtg
caatatttagcgagtgatttatttaaagggataggaaagcgtacagctgaaaaaattgtg
gaccatctaggggaacatgctatttctaaaattatggatgatcctgaggctttaaatggt
gttgtaaacaagcaaaaagcgcaagaaatatatgagacaattgttgaacatcaaggatta
gagaaagtaatgagttttttaaatggttatggttttggaacgaagctttctattaagatt
taccaacaatataaagagatgacattagaagtgattcgtaataatccatatcaacttatt
gaagaagtggatggaattggatttggaagagcggatgatataggacgtgcgttagggata
tcgggtaatcatgatgatcgtgtacgtgcgggatgtttttatacgttagagaatgtatca
ttacaacttggtcacgtttatatgagaaaagatcaacttgtaagagaaacgatgtcactt
ttaaataatcaagaaggaagagtgacggaggaagacattataggttgtattgaaatgatg
caaagtgaagggaaagtcatcatcgaggaagaacgagtgtatttggcatcgttattctac
tctgaaaaaggtgttgtaaagtctattcgcaggctcatgaatcaggaggaaacaccttca
ttccctgaagcagaagtgttaaagacgttaggtgaaattgaagaacaactgagcgtacag
tatgcaccacttcagcaagaagcaattcaaacggcacttcataaaccgatgatgttattg
acaggtggaccaggaacaggaaaaacaacagttattaaaggaattgttgaaatgtatgcg
tcacttcacgggctatcgttaaatccgaatgaatacagtgatgataatccatttccgata
ttattaacggctccaacaggaagggcagcgaagcgaatgagtgaatcgacaggacttcca
gcttgtacaattcaccgtttacttggctggacgccagaagggtctttccagcgtaatgaa
acagatccggtacaagggaagttgcttattattgatgaattttcaatggttgatatttgg
cttgcaaatcagctgtttaagtcattgccgacgaacattcaagttatcgttgtaggtgat
gaagatcaattaccatctgtaggacctggacaagtattgaaagatttattgaatgcaggt
gcagttccaactgtaaagcttactgaaatttatcgtcaagcggaaggttcatcagtaatt
caacttgctcatgcgataaaaaatggaacactcccaccagatttagcgcaaaatcaaaaa
gatcgttcatttatcggctgcacaggagctcaaattgttgaggttgttaagaaggtttgt
gaaaatgctaagacaaaaggttttagcgcaagagatgtacaagtattggccccgatgtat
cgtggaccggccggtattaatgtactaaacgaagcgttgcaagaagtatttaatccgaaa
agggaaaagagtaaagaaattgcttatggtgatgttgtatatcgaagaggcgataaagtt
ttgcaactcgttaatcagccggagagtcaagtgtttaatggtgatatcggagaaattgtt
tcggtgttttatgcgaaagaaaacgttgagcaacaagatatgattatcgtttcatttgat
ggaattgaggtaacatatacaaaaccagatttaaatcaaattacacatgcctattgctgt
tccattcataaatcgcaaggtagtgagtttccgattgtaattatgccgatagtaaaaagt
tataatcgtatgttacgtcgtaatttaatttatactggtattacaagaagtaagaagttc
cttattatttgcggggaggaagctgctttccagtctggtgtaaaccgccttgatgatgca
atgcgtcaaacgactttagcgagtcgattgcaggaatcgcaaggagaagtacagatggta
acagtgaatggcgaagaaatggacgtggaaaacatttcaccgtatgatttcatgtaa
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