Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110157614
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Entry
110157614 CDS
T05002
Symbol
cnot6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110157614 (cnot6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110157614 (cnot6)
Enzymes [BR:
bpec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110157614 (cnot6)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110157614 (cnot6)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110157614 (cnot6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_1
LRR_6
Motif
Other DBs
NCBI-GeneID:
110157614
NCBI-ProteinID:
XP_020777618
LinkDB
All DBs
Position
Unknown
AA seq
559 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSTALWSLTHLTALHLSD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLNYLLDNLAGAIKRIPTEQPPARSWISLQEP
DRTRASALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEILSCNSDIISLQE
VETEQYYNFFLPELKEQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFSAVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVHKEMMEVSSGKSLHGMEKQLLLVANA
HMHWDPEFSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGETNAIPLVLCADLNSLPDS
GVVEYLSSGGVDCTHKDFKELRYSDSLTKFNCNGKNSTSNGRITHGFKLKSAYENGLMPY
TNYTFDFKGVIDYIFYSKPHLNVLGILGPLDPHWLVENNVTGCPHPHIPSDHFSLFAQLE
LLLPNAPPQVNGLHLPARR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccggatccgaggcggatgtacacaattatgtccagc
gaggaggcagccaatgggaagaagtcgtactgggctgagctggaaattagtggtcgagtg
aggagtctcagcacagctctgtggtctcttacccatctcactgccctgcacctcagtgac
aactccttgtcacgcatcccgccagacattgccaaactacacaacctggtgtacctggat
ctctcatccaataagatcaggagcctgccggctgagctcggcaacatggtgtctctcagg
gaactgcttttaaataacaaccagttgcgggttctaccatttgaattgggaaaactattt
cagttacaaacactggggttgaaaggaaacccacttgcacaagaaattatgagcctctat
caggagcctgacggcacacggagactgctcaactacttgttagacaatctggcaggagcg
ataaagcgcataccaacagagcagcccccagctcggtcgtggatttcactgcaggagcct
gaccggacgcgagcgtcagctctgttttcagtgatgtgctacaatgtgctatgtgacaag
tacgccacccgtcaactatatggctactgtccgtcttgggctctaaactgggaatacaga
aagaagtccatcatgcaggagatcctcagctgcaattcagatatcatcagtttgcaggaa
gtagagaccgagcagtactacaacttctttttgccggagctgaaggagcagggctatgat
gggttcttcagtccaaagtctcgagccaggacgatgtcagagtcagaccggaaacatgtg
gacggctgcgccattttctacaagacggaaaagttcagtgcagtgcagaaacacacggtg
gagtttaaccagctggccatggcaaactccgagggctctgaggctatgctcaacagagtc
atgacgaaggataatatcggggtggctgtgctgctcgaagtacacaaagagatgatggag
gtctcctccggaaaatccctccatggcatggagaagcagctgctcctggtggccaatgct
cacatgcactgggaccccgagttctcggacgtcaaactggtccagaccatgatgttcctg
tcagaggtgaagaacattgtggacaaggccacacgcagtctcaagttatcgtccgtctct
ggagaaaccaatgccattcccctggtgctgtgcgctgacctcaactccctcccagactct
ggtgtggtggagtacctgagctctggaggagtggactgcactcacaaggacttcaaggag
ctgcgttacagcgacagtttgaccaaatttaactgcaatggcaagaacagcacgtccaac
ggcaggatcacccacggcttcaagctaaagagcgcctatgagaacggtctgatgccttac
accaactacacctttgactttaagggtgtcatcgactacattttctactccaagcctcac
ctgaacgtgctggggatcctgggccccctggacccccactggctggttgagaacaatgtg
accgggtgcccgcacccccacatcccctctgaccacttctcccttttcgcccaactggag
ctgctcctgcccaatgcgcccccacaggtcaatgggctgcacctgcctgcgcgcaggtag
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