Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110168712
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Entry
110168712 CDS
T05002
Name
(RefSeq) collagen alpha-1(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110168712
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bpec00536
]
110168712
Glycosaminoglycan binding proteins [BR:
bpec00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110168712
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
110168712
NCBI-ProteinID:
XP_020789861
LinkDB
All DBs
Position
Unknown
AA seq
1851 aa
AA seq
DB search
MDSLMRRKGRRRIPVLLYILLHIVSTQAALHIDILRELDLTENMEGVALEAGLCSNRTGT
QETDLAYRIDKKIQLSAPTKQLFPDTKFPENFSLMTTVQAKKDSQFFLLSIYDDQGVQQL
GLEIGRSPVFLYEDQNGQPTPEQYPTFKKINTADGKWHRIAYSVKGKSVTLYLDCQKAQT
LDLPRGDSAVVSTDGVTVFGTRLLDEDVFEGDVQQLLISEDPDAAATYCERYIPECDADL
PYSIQSADPSPNHHFTFPIQEFPEKQSKKDKKGKKDKKKRDKGSKGKGKRKGKKGSRKKK
HQEEQIQDGSPHATTAAPQYLSQEAVVPTEILVTTTTIETTVSPTEEYIKGLLELHTQET
DLTSESSTTGPNTVLEFEVEKEESEPVKAAVVEGSEDDLYDALSVSTVTVGPNVTDYEVF
EYDLKNDTSSEEYEIYEDSYDFAERELEETWQGQGPLRGEKGQKGEPAVVEPGTMIEGPP
GLQGPQGMSGPAGPVGPPGPRGDPGDKGPQGRPGLPGADGIPGPPGTVLMLPFHYGGDSQ
KGPVISPQQAQAQAILQQARISLKGPPGPLGLTGRPGPLGVPGPSGFKGDSGDGGPPGPA
GLPGPPGPNGKAGKRGRAGADGGRGAPGETGAKGDRGFDGLPGLLGDKGHRGDRGKPGPA
GPVGEPGEKGSDGPVGPRGQPGEPGARGLIGPRGSPGPPGQPGISGADGVQGAKGNMGPH
GDLGPPGQQGNPGAQGLPGPQGPIGLPGEKGPQGKQGMQGLPGIDGPPGHPGREGPPGEK
GIQGLVGAQGPVGYPGARGVKGADGIRGLKGNKGEKGEDGFPGFKGDMGLKGDRGDSGPP
GARGEDGPEGQKGQAGPNGESGAAGIAGEKGNLGVPGLPGYPGRQGQKGSLGFLGVAGAS
GEKGRRGPAGQQGQGGQRGPNGARGGRGARGPTGKPGEKGSAGQDGPPGSPGEQGPQGPQ
GRQGETGQRGPNGPPGKDGLPGHPGQRGEPGFQGKNGPPGPPGVVGPQXXXXXXXPTGDR
GHPGSPGPPGEHGLPGSAGKEGAKGDAGPAGAPGKSGPGGLQGFRGSRGTPGATGPPGLK
GGEGLPGVAGPVGATGERGPAGPAGAIGQPGRPGGVGPAGPMGEKGDPGEKGSMGPVGKD
GEQGPVGPPGVAGPPGPLGEDGDKGETGVSGQKGSKGDKGEAGPPGPLGIQGPVGPPGPP
GLDGETGPRGQQGMNGAKGDEGPRGFKGASGPSGLQGMPGQTGDKGESGHVGSLGPPGQH
GPRGPPGPIGAEGHAGLPGGVGQPGIVGEKGEDGEAGNPGPPGELGIAGTKGEFGEKGDT
GPPGAAGPPGPRGTPGEDGPKGHIGPIGFPGDPGPPGELGANGVDGVAGPKGDNGEPGKA
GPAGASGEPGPSGPPGRRGHVGPAGKEGKQGMKGAKGAAGTQGPVGKTGPVGAQGQPGRD
GPEGLRGIPGPAGEQGLNGPPGQAGPPGPTGPAGLPGLKGDPGTKGEKGHGGLIGLIGPP
GEPGEKGDRGLPGSEGAQGPKGDRGTAGQHGPTGPPGPHGLSGPAGEKGSKGDTGVVGTK
GDTGPAGPPGPPGPPATYVEPLPVREGKRKKKRHSEQAAAPALPTDNDFFQGDEALEDAE
GMEEVFASLASMKTEVELMRRPLGTYESPARTCKELMMVQPNYKNGEYWIDPNQGCHKDS
IKVYCNFTAEGETCLYPDKRIETVKLSSWNKEKPGTWYSQFRKGKQFSYIDRDGSPVHVV
QMTFLKLLSATAKQSFTYTCQNSAGWFDSASLSYQHALRLRAHNEEELSQSKSPFIQAVY
DGCKSRTGQERTVLEVNSSAELLPIIDVAPVDFGRNNQKFGFQVGPVCFNG
NT seq
5556 nt
NT seq
+upstream
nt +downstream
nt
atggacagtttaatgagaaggaaagggcgcaggaggataccggtgctactgtacatctta
ctacacatagtatcgactcaagcagctcttcacattgacatcttgagagagttggatttg
acagaaaacatggagggcgtggctttggaggcgggactttgcagtaacagaacagggaca
caggagacagacctggcctacagaatagacaaaaagattcaactcagtgcccccaccaag
caactgtttccagatacaaaattcccagagaacttctctctaatgaccacagtacaagct
aagaaggattcccagttcttcctcttgtccatctatgatgatcagggggtgcagcagtta
gggctggagattggacgctctcctgtgtttctctatgaagaccagaatggacagcctaca
cctgaacagtaccccacctttaaaaaaatcaacacagcagatggaaaatggcacagaata
gcctacagcgtgaaagggaagtcggttactctctacttggactgtcagaaggctcagacc
ctggatctgcctcgcggggacagtgcagtggtcagcacggatggtgtcactgtgtttggg
accagactgctggatgaagatgtgtttgagggagacgttcaacagctcctgatctcagaa
gaccctgatgctgcagccacatattgtgaaagatacatcccagagtgcgatgctgatctg
ccgtacagcatccagagcgcagacccatcccctaatcaccattttacctttccaatacaa
gaattccctgaaaagcagtctaagaaggacaaaaagggcaaaaaggacaaaaagaaaagg
gacaaggggtcaaagggcaaaggtaaacgtaaggggaagaagggatccaggaagaagaag
catcaagaagagcagatccaagatggttccccacatgccactacagcagcacctcagtat
ctgtcccaggaagcagttgtacccacggagattctagtgaccacaaccacaatagaaaca
acagtcagtcccaccgaagaatacatcaaaggcctgttggaactgcacactcaagagaca
gacctcacctctgagtcctccaccacggggcccaatacagtactagagtttgaggttgag
aaggaggagtctgagcctgtgaaggcagcagttgtggaaggttctgaagatgacctatac
gatgctctctctgtttccacagtaacagtgggcccaaatgtgaccgactatgaggtcttt
gagtatgacttaaagaacgacacaagctctgaagaatatgaaatttatgaagacagttat
gattttgcagaacgggaactagaagaaacatggcagggacagggtcctctcagaggagag
aagggtcagaagggagaacctgctgttgttgagccgggaacaatgatagaagggcccccg
ggtttacaaggaccacagggcatgagtggcccagctggacctgttggccccccaggacca
aggggtgatccaggtgataagggtccacagggacggccaggtcttcccggggctgatggg
attccaggtcccccaggaacagtgctaatgctgccattccactatggaggtgattcccaa
aaggggccagtgatatctccacaacaagcccaagcacaggccatcctgcagcaggctcgg
atttcgttgaagggccctccaggaccgttaggtcttacagggcgaccagggcctctgggt
gttccgggaccatctggttttaaaggagacagtggagatggtggcccccctgggccagct
ggtttgccaggacctccagggcctaatggaaaggcaggaaagagaggacgcgcaggagca
gatggtggtcgtggagcaccaggtgaaactggtgctaagggcgacaggggctttgatggt
ctgccaggtctcctgggagacaaaggccacagaggtgacagaggcaagccaggtcctgct
gggcctgttggagagccgggggagaaggggtctgacggacctgtgggaccaagaggacag
ccgggtgagcctggagcgcggggtctaatcgggccaaggggttcacctggtccacctggc
caaccgggaatcagtggagctgatggagttcaaggggcaaagggcaacatgggaccacat
ggagatttaggtccacctggtcaacaaggaaacccaggtgcacagggcttgccaggtcct
caaggtcccattggattgcccggggagaagggtcctcagggaaaacaaggaatgcaggga
ctaccaggcatcgatggtcctcctggtcatcccgggagagagggcccccctggagagaag
ggcatccaaggtttagttggtgctcagggtcctgtgggctacccaggggcccgtggagtc
aagggagctgatggcatccgaggtctgaaaggaaacaaaggagagaagggagaagatggc
tttcctgggttcaaaggtgacatgggcctcaaaggagacagaggtgatagtggcccaccg
ggtgccagaggagaggacggtcctgaaggacagaagggacaagctggaccaaatggggaa
tcaggagcagctggtattgctggtgaaaagggtaacctcggtgtacctgggctgcccgga
tacccaggaaggcaaggacaaaaggggtcactgggcttccttggtgtggcaggagcctca
ggagagaaaggacgaaggggtccagctggtcaacaggggcaaggaggccagagaggtcca
aatggagctcgaggggggagaggtgcaagaggccccactggaaaaccaggagaaaagggt
tctgctggacaagatggccccccaggatctccaggtgaacagggacctcaaggaccacag
ggaaggcaaggtgaaacaggacaaaggggacctaatggtccaccaggaaaagatggactg
cctggtcatccaggccagagaggcgaaccaggttttcaaggcaaaaatggtcctcctggg
cctcccggtgttgtgggaccacaannnnnnnnnnnnnnnnnnngaccaacaggagacaga
ggccacccagggtcaccaggaccccctggagaacatggtttacccggatcagcgggaaag
gagggggccaagggagatgcaggtccagcaggtgcaccagggaaaagtggcccaggtgga
ctccagggctttagaggcagcagagggaccccaggagcaacaggtcctccaggtttgaag
ggtggagagggtctacctggtgttgcaggaccagtgggtgccaccggagagaggggccct
gctgggccagctggtgctattggccagcctggacggcctggaggcgtgggacctgctggg
cctatgggagagaaaggagatccgggagagaagggatctatgggtccagtggggaaggac
ggtgaacaagggcctgttggaccacccggcgttgcagggcctcctggacctctaggagag
gatggagataaaggagaaacaggagtgtccggccagaaaggcagcaaaggagacaaagga
gaagctggaccaccaggaccacttggaattcaaggacctgtaggcccacctggaccaccg
ggtttagatggagagactgggcctcggggacagcagggaatgaacggggctaaaggagat
gagggaccaagaggcttcaaaggggcttctggtccatctggacttcaggggatgcctggg
cagacaggagacaagggtgaaagtgggcatgttggttcactgggaccaccaggacagcat
ggaccaagggggcccccaggtcccattggtgcagagggtcatgctggattgcctggcgga
gttggtcagcctggaattgttggagagaagggtgaggacggcgaagcaggaaacccaggc
ccccccggtgaactgggtattgctggaactaaaggcgagtttggggagaagggtgacact
ggtcctcccggtgcagccggacccccaggaccaagaggaacaccgggtgaggacgggccc
aagggacacattggtcccattggttttcctggagatcctggacctcctggtgaacttggt
gccaatggagtagacggtgtagcagggcctaaaggagacaatggagaaccaggaaaagca
gggcctgctggagcatctggggaaccaggaccctctggccctcctggacgaaggggtcat
gttggtccagcaggaaaggaaggaaagcagggaatgaaaggggccaaaggtgcagcagga
acgcagggtcctgttggaaagaccggcccagtgggagctcaaggacagccggggagagat
ggtcccgagggactgagaggcatcccagggcctgcgggagaacaagggttgaatggtcca
ccaggacaagccggaccaccaggaccaacaggcccagcaggactgcccgggcttaaagga
gacccaggaacaaagggagaaaagggtcatggagggttgatcggtctaattggtccacca
ggagagcctggagaaaagggagacaggggcttaccaggcagtgagggtgctcaagggcct
aaaggagatcggggtacagctggtcaacacggtcctacaggcccacctggaccccatggc
ttatccggtccagctggtgagaaaggatcaaagggagacacgggagttgtaggcaccaaa
ggagacaccgggccagcaggaccacccggacccccaggaccacctgcaacatacgtggag
ccgctgcccgtcagggaaggcaagcgcaagaaaaaaaggcattcagagcaagcagcagca
ccagccctgcccacagacaatgacttcttccaaggggacgaggcattggaggatgcagag
ggcatggaggaagtctttgcctctcttgcctccatgaagacagaggtggagctgatgagg
cggcctctgggaacttatgagagcccagcccgcacctgcaaagagctcatgatggtccag
cccaattacaaaaacggagagtactggatagacccaaaccagggctgtcacaaggactct
atcaaggtctattgtaacttcacagcagaaggggagacttgtctctatcctgacaagaga
attgagacggtcaaattatcatcatggaataaggagaagcctggaacctggtacagtcaa
ttcaggaaaggaaagcagttctcctatattgacagagatgggagcccggtgcatgtagtt
caaatgaccttcctcaaactgctcagtgccacggccaaacagagcttcacttacacctgt
cagaactcagcaggatggttcgacagtgcgtccctgtcctaccagcatgccctgcgcctc
cgggcccacaacgaggaggagctgagccagagcaagagccccttcatccaggctgtgtat
gacgggtgcaagtctcgtacaggccaggagaggacagtcctagaggtcaactcttctgcc
gagttgcttcctattattgacgttgctcctgtggattttggtcgcaacaatcagaagttt
ggattccaagttgggccagtatgtttcaatggttaa
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integrated database retrieval system
