KEGG   Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110175434
Entry
110175434         CDS       T05002                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
bpec  Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:bpec00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    110175434 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpec03400]
    110175434 (tdp1)
DNA repair and recombination proteins [BR:bpec03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     110175434 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 110175434
NCBI-ProteinID: XP_020797267
LinkDB
Position
Unknown
AA seq 615 aa
MSQDSQHGKWSISSSEDEDECLPPSGTTTKSAKTMFLQSPSPPKTDLVSAIGEVKPEQCD
SSISTLFIGSEARKSATSNQLNPVKFETSPSLAGKRKKEVPEGSGWALSDSDDDDLHVKK
KTVNNNFPKKEHSSPQAKKQKAANERPPSPHGRVYYIDEPEDFFESTLPCLNDTYGFYLN
KVTGLDEKYNNGALHIRDILSPLFGTLKESVQFNYCFDVAWMVEQYPKEFRDCPVLIVHG
DKREAKARLVRDAQPYPHVKLCQAKLDIAFGTHHTKMMLLWYEEGFRIIILTSNMIRADW
YQKTQGMWMSPLFPRLPKDNSNSGESPTFFKRDLLEYLATYRAPELEEWIQRIKEHDLSE
TKVYLIGSTPGRYVGPDMDRWGHLRLRKLLYDHTTPIPGEERWPVVGQFSSIGSMGIDKT
KWLTAEFQRTLTTLGKSSLRSDPPLYLLYPSVEDVRTSLEGYPAGGSLPYSIQTAQKQLW
LHSFFHRWKADTTGRTHAMPHIKTYMRVSPDFSELAWYCITSANLSKAAWGALEKNNTQI
MVRSYELGVLFLPSAYNMKTFPIQRNPFPVSSPSTGFPVPFDLPPTSYTSKDQPWIWNIA
YTQAPDTHGNVWVPS
NT seq 1848 nt   +upstreamnt  +downstreamnt
atgtctcaagacagtcagcatggcaagtggagcatctcaagtagtgaagatgaggacgaa
tgccttcctccttctggaaccacaacaaaaagtgccaagaccatgtttttgcagtctcca
tcaccccctaaaacagacttagtttctgccataggtgaagttaaacctgaacaatgtgac
tcttccatatctacactttttattggatctgaggccagaaagtctgctacctcaaaccaa
ctaaaccctgtcaagtttgaaaccagtccatcgctggctggaaagaggaagaaagaggtg
ccagaggggtcagggtgggctctgtctgatagtgatgatgatgatcttcatgttaaaaag
aaaacagtcaacaataattttcccaagaaagagcattcaagccctcaagccaaaaagcag
aaggcagcaaatgaacgcccacccagtccccatggtcgagtgtactacatagatgagcca
gaggacttttttgagtccactttgccctgtctaaatgatacctatggcttctacctcaac
aaagtaactgggctggacgaaaagtacaacaatggcgctctgcatatcagagacatcctc
tcaccgttgtttggaactttgaaggaatctgttcagttcaactactgctttgatgtagct
tggatggttgagcaatacccaaaggagttcagagactgtcctgttctcatcgtccatgga
gacaaaagagaggccaaagctcggcttgtccgtgatgctcaaccctaccctcatgttaaa
ttatgccaggctaaattggatattgcatttggaactcatcacacgaagatgatgttgctg
tggtatgaagaaggtttcagaatcataattctgacatccaacatgattagagcagactgg
taccagaaaactcaagggatgtggatgagtcctctgtttccacggttaccaaaggacaac
agtaattcaggggagtcacccaccttcttcaagagggatttgcttgagtatcttgcaaca
tacagagcgcctgaacttgaggaatggattcaacgtatcaaagaacatgacctttcagag
accaaagtgtatttaattggttcaactccagggagatatgtgggaccagacatggaccga
tggggccatctcaggctgagaaagcttttgtacgaccatactacacctattcctggtgaa
gaacggtggccagtggttggtcagttttccagcatcggatccatgggaatagacaaaacc
aaatggttgacagcagagtttcaacgcacattaactactctggggaagtcctctctccgc
tcagatccccctctttatttgttgtatccatcagtagaagatgtgcggacaagtttagaa
gggtatccagctggtggttcgcttccatacagcattcagacagctcagaaacaattatgg
cttcactctttttttcaccggtggaaggcagacacaacaggaaggactcatgccatgcct
cacattaagacatatatgagagtttctccagatttctctgagcttgcctggtattgcata
acgagtgcaaacttatcaaaagctgcatggggtgcactggagaagaataacacacaaata
atggtccggtcctatgagctaggggttctcttcttgccctcagcctataatatgaagaca
ttccctatacagagaaatccctttcctgtttcttcaccttccactggattccctgtgccc
tttgaccttcctccaacaagttacacctccaaagatcagccatggatctggaacatagcg
tacacccaggccccggacacacatggtaatgtctgggtcccttcataa

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