Bathycoccus prasinos: Bathy04g05100
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Entry
Bathy04g05100 CDS
T03089
Name
(RefSeq) DEAH (Asp-Glu-Ala-His) box polypeptide 16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Bathy04g05100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bpg03041
]
Bathy04g05100
Enzymes [BR:
bpg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Bathy04g05100
Spliceosome [BR:
bpg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Bathy04g05100
Complex C
U4/U6.U5 tri-SnRNP related factors
Bathy04g05100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_N
Helicase_C
HA2_C
DEAD
AAA_22
nSTAND3
AAA_19
PWI
T2SSE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
19016536
NCBI-ProteinID:
XP_007513891
UniProt:
K8EEI7
LinkDB
All DBs
Position
4:1030231..1033788
Genome browser
AA seq
1185 aa
AA seq
DB search
MGARGDAIGDKHALLKWIGEKLNELCGFTEANVNQFVLAIAEKHATSSSSSHKKLYETLK
DSGFDAVTLEFSRELCNRLLNKSEDTINSFPKQKTKKDEEVREGKEKKKTSTNIAAAAYD
KDEVDDEENKYALVQSSSSDEDVDEDSKRKSKKRSKEKKKSRKSLKKKMKREERKGRKQD
SAMGGATSSSADAYISSQSSSSEDEETKLRRERALQGYRDLELEPDDDDDEEEEEEISEE
TARERERLRDQEEKREFEERLRMKDEEKTKKLDNGGGILKSNKIKSTNAEGDEEDEEEVK
RGLIPDLRKVSRQEYLKKRELQKLEELKEQIADDEKMYEYGGRPLTEKQKKDLEYKKQTL
ALAEAQLMNVEESKEEVYQMPLTYDDVDDKANAKNNRDKRFQVALERYKESAQSRKEEKE
DANPFKEQDEWEDHQIRQAKMGKKNKEQDEKRGYDYVFEDQIAFVVDEQIKGTNVSDSSS
SSDSDSDSQREKTRRRRRRNKTTQEKIDDENDPDSKALRGELGARKKIEADRRSLPIYPY
RDDLIKAVEDHQTIVIVGETGSGKTTQIPQYMWEAGFAKEEGVRIGCTQPRRVAAMSVAT
RVADEVGCKLGNEIGYSIRFEDCTSDKTKVKYMTDGMLLREFLGEPDLKSYSVMMVDEAH
ERTLHTDVLFGLVKDIARFRPEIKLLISSATLDAEKFSEYFDFAPIFRIPGRRYPVDILY
TKQPEADYMDAVVVSVLQIHAQEPKGDILVFCTGQEEIEALEETLNTRVKQSQSTNDDED
GGRSKRLAELVVCPIYASLPTDLQQKIFEPAPEKGRKCVLATNIAETSLTIDGIKYVIDP
GFCKQKSYNPRSGMESLVVTPTSQASAMQRAGRAGRTSAGKCYRLYTAWSFQNELDPNTV
PEIQRTNLGNVVLMLKSLGINDLMHFDFMDPPPAETLLRALEQLYALGALNDRGELTKLG
RRMAEFPLDPMLSKTLIASDKYKCVDEVATVCAMLSCGNTIFYRPKEKQLLADHAHKAFH
VGDVGDHLALMNVFNSWQDCDYSTQWCFENFVQHRTMKQARDIRDQLVKMLERVEIDLSS
DRNAVDNIKKCITSGFFYHCAKLQRNGSYRTVKNPQTVSIHPSSGLAKELPKWVVYFELV
FTSKEYMRQCIEIQPKWLVEIAPHYYQSREIDIDGDAQKQKRTPA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgcggggggatgcgattggggataagcacgcgctgttaaaatggatcggcgaa
aagttgaacgagttgtgcggatttaccgaagcaaatgtaaaccaattcgttttggccatc
gcggaaaagcacgccacgtcttcatcttcatcgcataagaagttgtatgaaacgttaaaa
gactctggatttgatgcggtgacgctcgagttctctcgagaattgtgcaatcgtttgctt
aacaagagcgaggatactattaactcctttcctaaacagaaaacgaagaaggatgaggaa
gtaagagaaggaaaagaaaagaaaaagacatcgacaaacatcgccgcggcagcatacgat
aaagacgaagtcgacgacgaggagaacaagtacgctctggtgcagtcttcgtcctcggac
gaagacgttgatgaggattccaaaaggaaatcaaagaagagaagtaaagagaagaagaaa
tcaaggaagagtttaaagaagaagatgaagagagaggagagaaagggaaggaagcaagat
tcagcaatggggggagcaacgtcatcgtcggcagatgcatatatttcttctcaatcttct
tcttcagaagacgaggagacgaaattgaggcgtgaacgagctttgcaagggtatcgcgat
ttagagttggagccggatgacgacgacgacgaggaggaagaagaagaaatatccgaagag
actgctcgcgagagagaacgattgcgggaccaagaagaaaagcgtgaatttgaggagcgc
ttgcgcatgaaagacgaggagaaaacgaagaagctcgataacggcggcggtatcctcaaa
tcgaacaaaatcaaatcgaccaatgcagaaggagatgaagaggacgaggaagaagtaaag
agaggcctaattccagacttgaggaaagtctcgcgacaggagtatctcaaaaagagagag
cttcaaaagttagaagagttgaaagagcaaatcgcggacgatgagaagatgtatgaatac
ggcgggcgtccgctgacggagaaacaaaagaaagatttagagtacaagaaacaaacctta
gcgttagcagaggcgcaacttatgaacgtcgaggagtccaaagaggaagtatatcaaatg
ccgttgacgtacgacgacgtggacgataaagcaaacgcaaaaaacaatcgcgataaacgc
ttccaagttgctttagagagatacaaagagagcgctcaatctagaaaagaggagaaggag
gacgccaacccgttcaaagaacaagatgaatgggaagatcatcagattcgacaagcaaaa
atgggcaagaagaataaagaacaagatgaaaagaggggatacgattacgtgtttgaagat
caaatagcgttcgttgtcgacgagcagatcaagggaactaacgtctccgattcatcgtca
tcctcggattccgattccgattcgcagagggaaaagacgagaagaagaagaagaagaaac
aaaacgacgcaagaaaaaattgacgacgaaaacgatccagattctaaagctttgcgcgga
gagctcggcgctagaaagaaaattgaagccgataggaggtccttgcctatttatccatat
cgagatgatttaatcaaggcggttgaagatcatcaaaccatcgttattgttggagaaacg
ggttccggaaagacgacgcagatacctcaatacatgtgggaggcgggatttgcgaaagaa
gaaggcgttcgaatcgggtgcacacaacctagacgagtagcggcgatgtccgtggcgacc
cgagttgcagatgaagtaggatgcaaactaggaaacgagattggttattcgattcgcttt
gaagattgtacgagcgataaaacgaaggtgaaatacatgacagatggtatgcttttgcgc
gaatttctcggcgagcctgatttgaaatcttacagtgtcatgatggtggacgaagcgcac
gagcgaacgcttcacacggacgttttattcggactcgtcaaggacatcgcgcggttccgt
cctgagataaaattgttaatttcatccgcgacgctcgacgcggagaagttctcagagtac
tttgatttcgcgccaatctttagaattccagggagacgatacccggtggatattttgtac
acgaaacaaccagaggcggattatatggatgcggtggttgtttctgtgttgcaaatccat
gcgcaagaaccgaaaggtgatatcttggttttttgcaccggccaggaagagattgaggct
ttggaagaaacactcaacacgcgcgtaaaacaatcgcagtcaaccaacgacgacgaagat
ggaggaaggagtaaacgtttggcggaattagtcgtgtgtccaatctacgcgagcttgccc
acggatttacaacaaaaaattttcgaaccagcgccagaaaaagggagaaaatgtgtatta
gcaacgaacatcgccgaaacgtctttgaccatcgacggcatcaaatacgtcatcgatcca
ggattttgcaagcagaagagttacaacccgcgctcgggtatggaatcattagtagtcaca
ccaacttctcaagcatccgcgatgcaacgagccgggagagctggtcgaacatcggctggt
aagtgctatcgtttgtataccgcgtggtcgtttcagaacgagctagatccaaacacggtt
ccggaaatccaaagaacgaatttaggaaacgttgttttgatgctgaagtccttgggaatt
aacgacctcatgcactttgatttcatggacccgccgcctgcggaaacgcttttacgcgct
ttggagcagctctacgcgctcggcgctttgaacgatcgaggcgaactcacaaaacttggt
cgtcgcatggctgaatttccgctcgatcctatgctttcgaagacgttaatcgcgagcgat
aagtacaagtgcgtcgacgaagtagcgacagtatgcgcgatgctctcgtgcggcaacacc
atcttttaccgaccaaaagagaagcagcttttagccgatcatgcgcataaggcttttcat
gtgggtgatgtcggtgaccatctagcattgatgaacgtcttcaactcgtggcaagactgc
gattactcgacgcagtggtgtttcgaaaattttgtgcaacacagaaccatgaagcaggcg
agagacattcgtgaccaacttgttaagatgttggaaagagtcgagattgatttgtcgtcc
gatcgaaacgcggtcgataacatcaagaagtgcataacatctggtttcttttatcattgt
gcaaagttacagagaaacggaagttatcgaaccgtgaagaatccgcaaacggtgtccatt
cacccgagttctggattggcgaaggagttgcccaaatgggtcgtatacttcgagcttgtc
tttacgagtaaagagtacatgcgtcagtgcattgagattcaaccgaaatggttggttgaa
atagcaccgcattattatcaatctcgcgaaattgacatcgacggagatgctcaaaaacaa
aaacgtacgcccgcttaa
DBGET
integrated database retrieval system
