Burkholderia pseudomallei 1710b: BURPS1710b_A1335
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Entry
BURPS1710b_A1335 CDS
T00289
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpm
Burkholderia pseudomallei 1710b
Pathway
bpm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BURPS1710b_A1335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpm03400
]
BURPS1710b_A1335
Enzymes [BR:
bpm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BURPS1710b_A1335
DNA repair and recombination proteins [BR:
bpm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BURPS1710b_A1335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABA51818
UniProt:
Q3JIW1
LinkDB
All DBs
Position
II:complement(1647681..1650623)
Genome browser
AA seq
980 aa
AA seq
DB search
MRGRGLRDSGGKHEQWLLIKERDGDARDQADYDVLRARPGSVLGGARSARARRGRAAEPT
ERDAAAPKRARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASKRASKREGTNTGNGARS
GKGSGKGAGEGVATSRRKRAAAPQSSDVDSADTDSPAARGLALPAGLAARFGLSGAKRAA
LPRTLRPQLATLVDTPTPGKDWLYEAKFDGYRVLIRIDRGAASRPIAVYTREGLDWSAKF
AAQLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSNDVTLFLFDVPFLNGF
DLRGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDAGLEGLIGKRRDGRY
VEGRSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAPGDEGERRTRGAAET
RDERRRASHASRTSRTSRTSRTSRTSRAPDAGAARAPQARPLALRYVGRVGTGFGERTLR
ALARTLREHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVRQASFVGLRE
DKPARTIVREQPQSMETEAMNEHADEHTDEHTDARAERRTGGRTRRKARDDGARDAPALA
RHPKRGDAGSSARKGARDGEAGKRAAAGSSPSSSPSSSTSTSPSISASGRTRGGGRSASR
DRAGDADEGANEDANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVEYWEWIAP
WLLPHLKGRPVSLVRAPADIGGELFFQKHADKLEIPNVALHPGLDPGHEALITIDDVKGL
VGAAQMGTIELHTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALLDELGLVS
FCKTSGGKGLHVVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNRKGKIFVD
YLRNNRGASTIAAYSVRARPGLGVSVPIAWDELPDTTGAAQWTLANLHERLDALKHDPWR
AYAHVRQRVTAALRKRLSDG
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcggccgcgggctgcgtgacagcggcggcaagcacgagcaatggctgctgatcaag
gaacgcgacggcgacgcgcgcgaccaagcggactacgacgtgctgcgcgcacggccgggc
agcgtgctcggcggcgcgcggtccgcgcgggcgaggcgcgggcgcgcggccgagccgacg
gagcgcgacgccgccgcgccgaagcgggcgcgcgcttcagtgccgaaagggcgcgccgaa
gcgaagacgagcgggcgtgcgccgcgcaccgtgtcgaacgggactgcgggcgcgggtaag
ggcgcaagcaagcgtgcaagcaagcgcgagggcacgaataccggaaacggcgcgagaagc
ggcaagggcagcggcaagggcgcgggcgagggcgtggccacatcgcgccgcaaacgcgcc
gccgcgccgcagtcgtccgacgtcgattcggccgataccgattcacccgcggcgcgcggc
ctcgcgttgcccgccgggcttgccgcgcgcttcggcctgagcggcgcgaagcgcgcggcg
ctgccgcgcacgttgcggccgcaactggcgacgctcgtcgacacgccgacgcccggcaaa
gactggctatacgaagcgaagttcgatggctaccgcgtgctgatccggatcgatcgcggc
gcggcgtcccgcccgattgccgtctacacgcgcgaggggctcgactggagcgcgaaattc
gccgcgcagctcgacgcgctcgcgcgcctgccggtcgaccggggctggctcgacggcgag
gcggtcgtgctcgatcgcgcgggcgtgccggatttccaggcgctgcagaacgcgctcggc
gccggacgctcgaacgatgtcacgctgttcctgttcgacgtgccgttcctgaacggcttc
gacctgcgcggcgtgccgctcgaacggcggcgcgcgctgctcgccgcgctcgtcgccgcg
catgcgagcgacgtgctgcgctactcggagagcctcgcgttcgaggccgccgatctgctg
acgggcgcgtgcgacgcggggctcgaagggctgatcggcaagcggcgcgatggccggtac
gtcgaggggcgctcgagatcgtggatcaagctgaagtgccggcgcaggcaggagttcgtg
attggcggctacacggagccggccggacggcgcagcggattcggcgcgttgctgctcggc
gtgtacgcccgggcgccgggcgacgagggcgaacgaaggacgcgcggcgcggccgaaacg
cgcgacgagcggcgtcgtgcatcccacgcatcccgcacatcccgcacatcccgcacatcc
cgcacatcccgcacatcccgcgcgcccgatgccggcgcggcgcgcgcaccgcaggcgcgg
ccgctcgcgttgcgctacgtcggccgcgtcggcaccggcttcggcgagcgcacgcttcgc
gcgctcgcgcggacgctgcgcgagcacgagaccgggcggatgccgttcgcggacgtgccg
cgcgagcgcagcggcacgccggttcactgggtgaagcccgtgctcgtcgccgaatgcgaa
ttcgcggaatggacgggcgacggcatcgtccggcaggcgtcgttcgtcgggctgcgcgaa
gacaagccggcgcgcacgatcgttcgcgagcaaccgcaatccatggagacggaagccatg
aatgaacacgctgacgaacatacggatgaacataccgatgcacgcgccgaacgtcgcacc
ggcggacgcacgcggcgcaaagcacgtgacgacggcgcgcgcgacgcgccggcgcttgcc
cgccatccaaagcgcggcgatgcgggatcgtccgcgcgcaagggcgcgcgggacggggag
gcgggcaagcgcgccgccgcgggatcgtcgccttcgtcttcaccgtcgagttcgacttcg
acttcgccttcgatttcggcgtcagggcgcacgcgcgggggcggtcgttccgcctcgcgc
gatcgagccggcgatgcggacgaaggcgcgaacgaagacgcgaacgatcacgcgccgcgc
gagcgcgccggcgcgccgaaggtggcgggcgtgcgcgtctcgcatcccggccgcgtgatc
gatccgcacacgggcacgcgcaagctcgacctcgtcgaatactgggaatggatcgcgccg
tggctgctgccgcatctgaagggccggccggtgtcgctcgtgcgcgcgcccgccgacatc
ggcggcgagctgttcttccagaagcacgcggacaagctggagattccgaacgtcgcgctg
cacccggggctcgatccgggccatgaggcgctcatcacgatcgacgatgtgaaggggctc
gtcggcgccgcgcaaatgggcacgatcgagctgcacacgtggaacgcgcacgtgtcgaac
atcgagaagccggaccgcgcggtgttcgacctcgacccggacccgtcgctcgactggcgc
gcggtgatcgaggccgcgcagctcacgcgcgcgctgctggacgagctcggcctcgtgtcg
ttctgcaagacgagcggcggcaaggggctgcacgtcgtcgtgccgctcgcgcgccatgcg
ggctgggacgatgtgaaggcgttcgcgcacgcggtggcgcggcacatggcggcgaccctg
cccgagcgcttcaccgcgacgatggggccgcgcaaccggaagggcaagatcttcgtcgac
tatctgcgcaacaaccgcggcgcgagcacgatcgccgcgtactcggtgcgcgcgaggccg
gggcttggcgtatcggtgccgatcgcatgggacgaactgccggatacgacgggcgccgcg
caatggacgctcgcgaacctgcacgagcgtctcgacgcgctgaagcacgacccgtggcgc
gcctatgcgcatgtgcggcaacgcgtgacggcggcgttgcggaagcggctgagcgatggg
tag
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