Bifidobacterium pseudocatenulatum: BBPC_0273
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Entry
BBPC_0273 CDS
T03932
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bpsc
Bifidobacterium pseudocatenulatum
Pathway
bpsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBPC_0273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpsc03019
]
BBPC_0273
03016 Transfer RNA biogenesis [BR:
bpsc03016
]
BBPC_0273
Enzymes [BR:
bpsc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BBPC_0273
Messenger RNA biogenesis [BR:
bpsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBPC_0273
Transfer RNA biogenesis [BR:
bpsc03016
]
Prokaryotic type
tRNA degradation factors
BBPC_0273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH_2
PCB_OB
DUF1773
KH_5
S1_2
Motif
Other DBs
NCBI-ProteinID:
BAR02951
UniProt:
C0BQQ3
LinkDB
All DBs
Position
357669..360332
Genome browser
AA seq
887 aa
AA seq
DB search
MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQ
VVETVLAVNPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVVENGDVAIAMIEAGAGKNAWHLIYDEGQTKPDEEVVAGGLEAAKPFIKV
ICEAQAELKNIAAKETKEFQLFPEYTEDLYNRIDEIAHADLDEALSIAEKLPRQDRIHEI
KEGVKATLAGEFTDMDDAEKEKEIGNAFKELQRQIVRRRILTQDYRIDGRGLRDIRTLSA
EVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAEKALVPVMPSREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLAAGVPLKAPVAGIAMGLVSGDVDGQHIFKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADILASALQQAKEARTTILEVINECIDGPAEMSPYAPRIITTTVPVDKIG
EVIGPKGKMINQIQEETGAEIAIEDDGTVFISSEGGDGAEKAKQIIDQIANPHVPEAGET
YNGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVD
DRGKISLAIPGFEDQESSAPRRERFDRDDRRGSRGRRDDRRSDRDDRDYDDRPRRRRSDR
DDDRDYDDRPRRRRSDRDDRDYDRDDRRSDRDDRDYDDRPRRRRSDRDDRDYDRDDRRSD
RRRSSRRDDRNPRYAADENYDEYRADREERSERPRRRVRRDFDPFED
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgaaatcaaggcggttgaagccgtaatcgataatggttcatttggcaag
cgcacgttgcgcttcgagaccggtcgtctcgcccagcaggcggatggtgccgtcgccgcc
tatcttgacgatgattcgatgattctgtcgaccaccaccgccggttccagcccgaaggag
aactacgacttcttcccgctgaccgtggacgtggaagagaagatgtacgccgccggcaag
attccgggctcgttcttccgccgtgaaggccgtccgagctccgaggcgattctggcttgc
cgtatcatcgaccgtccgctgcgcccgctgttcccgcacacgctgcgcaacgaagtgcag
gttgtggaaaccgtgctcgccgtcaacccggacgatgcctacgatgttatcgctctgaac
gctgcttccgcttccaccatgatttccggtctgccgttcgagggtccggtttccggcgtt
cgtctggctctgatcgacggtcagtgggtcgctttcccgcgttggagcgagcgtgagcgc
gccgtgttcgaaatcgtggttgccggccgcgtggtggagaacggcgatgttgccatcgct
atgatcgaagctggcgcaggtaagaacgcctggcacctcatctacgacgaaggccagacc
aagccggacgaggaagtcgttgccggtggtcttgaagccgccaagccgttcatcaaggtg
atctgcgaggctcaggccgaactcaagaacatcgctgcgaaggaaaccaaggaattccag
ctcttcccggagtacaccgaagatctgtacaaccgcatcgacgaaatcgcccacgctgat
ctcgacgaggctctctccattgccgagaagctgccgcgtcaggatcgcattcatgagatc
aaggaaggcgtcaaagccactctcgccggtgaattcaccgacatggacgatgccgaaaag
gaaaaggagatcggcaatgcgttcaaggagctgcagcgccagatcgtgcgtcgccgcatc
ctgacccaggattaccgcatcgacggccgtggcctgcgcgacatccgcaccctgtccgct
gaagtggacatcgttccgcgcgtgcacggttccgcactgttccagcgtggcgaaacccag
attctgggcgtcaccaccctgaacatgctcaagatggaacagcagatcgacgcactgtcc
ggtccgcagtccaagcgttacatgcacaactatgagatgccgccgtactccaccggtgaa
accggccgcgtcggctccccgaagcgccgcgaaatcggccacggtgcgctggcggagaag
gctctcgtgcctgtgatgccaagccgtgaagagttcccgtacgccatccgtcaggtctcc
gaagccattggttccaacggttccacctccatgggttccgtgtgcgcctccaccctgtcg
ttgctcgctgcaggcgtgccgctgaaggctccggttgccggcatcgccatgggcctcgtg
tccggtgatgttgacggccagcacatcttcaagaccctgaccgatattctcggtgccgaa
gacgcattcggcgatatggacttcaaggtcgcaggcacttccgaattcatcaccgccctg
cagcttgacaccaagctcgacggcattccggcagacattctggcctctgctctgcagcag
gccaaggaagcccgtaccaccattctcgaagtcatcaacgagtgcatcgatggtccggcc
gagatgagcccgtacgcaccgcgcatcatcaccaccaccgttccggtcgacaagatcggc
gaagtcatcggtccgaagggcaagatgatcaaccagattcaggaagagaccggtgcggag
atcgccatcgaagatgacggtaccgtgttcatctcctccgaaggtggcgacggcgctgaa
aaggccaagcagatcatcgaccagatcgccaacccgcacgttcctgaagccggcgaaacc
tacaacggcaaggttgtgaagaccacctccttcggtgccttcgtgaacctgaccccgggc
accgacggcctgttgcacatctcccagatccgtaatctggccaacggcgagcgtatcgac
gccgtcgaagacgtgctcaaggaaggcgacaccgttgaggtagtcgtgcagggcgttgac
gatcgcggcaagatctccttggccattccgggcttcgaagatcaggaatcctccgctccg
cgtcgcgagcgtttcgatcgcgatgaccgtcgcggcagccgtggccgtcgtgatgatcgt
cgttccgatcgtgacgatcgtgattatgatgatcgtccgcgtcgtcgtcgttctgatcgt
gacgatgaccgcgactatgatgatcgtccgcgtcgtcgtcgttccgaccgcgacgaccgt
gattacgatcgtgatgatcgtcgttccgatcgtgacgatcgtgattatgatgatcgtccg
cgtcgtcgtcgttctgatcgtgacgaccgtgattacgatcgtgatgatcgtcgttccgac
cgtcgccgcagcagccgccgcgacgaccgcaacccgcgttacgcagccgacgagaactac
gacgagtaccgtgccgatcgcgaagagcgttccgagcgtcctcgccgccgcgtccgccgc
gactttgatccttttgaggactga
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