Burkholderia pseudomallei MSHR520: BBX_4850
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Entry
BBX_4850 CDS
T03163
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpsd
Burkholderia pseudomallei MSHR520
Pathway
bpsd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BBX_4850 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpsd03400
]
BBX_4850 (ligD)
Enzymes [BR:
bpsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BBX_4850 (ligD)
DNA repair and recombination proteins [BR:
bpsd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BBX_4850 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AHK69107
LinkDB
All DBs
Position
2:complement(1631445..1634927)
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AA seq
1160 aa
AA seq
DB search
MAGKLSVYRSRRRFGETPEPEGARRSPRRTKGAGRAGDESKRRARGDAAASSRGERAARR
GRAQQPARGRSALHYVIQEHHARRLHYDFRLELDGTLKSWAIPKGPSLDPSVKRLAVHVE
DHPLEYAAFEGEIPEGHYGAGSVIVWDRGAWTPAGGVAAARAGYRAGKLSFTLDGDKLHG
GWALVRSRGLRDSGGKHEQWLLIKERDGDARDEADYDVLRARPGSVLGGARSARARRGRA
AEPTERDAAAPKRARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASKRASKREGTNTGN
GARSGKGNGNGKGAGKGGATPRRKRTAAPQSFDVDSADTDSPAARGLALPAGLAARFGLS
GAKRAALPRTLRPQLATLVDAPPPGKDWLYEAKFDGYRVLIRIDRGAASRPIAVYTREGL
DWSAKFAAQLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSNDVTLFLFDV
PFLNGFDLRGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDAGLEGLIGK
RRDGRYVEGRSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAPGDEGDEGE
RRTRGAAETRDERRRASHASRTSCTSRAPDAGAARAPQARPLALRYVGRVGTGFGERTLR
ALARTLREHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVRQASFVGLRE
DKPARTIVREQPQSMETEAMNEHADKHTDEHTDARAERRTGGRTRRKARDGGARDAPPLA
RHPKRGDAGSSARKGARDGEAGKRAAAGSSPSSSPSSSTSTSPSISASRRTRGGGRSASR
DRAGDADEGANEDANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVEYWEWIAP
WLLPHLKGRPVSLVRAPADIGGELFFQKHADKLEIPNVALHAGLDPGHEALITIDDVKGL
VGAAQMGTIELHTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALLDELGLVS
FCKTSGGKGLHVVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNRKGKIFVD
YLRNNRGASTIAAYSVRARPGLGVSVPIAWDELPDTTGAAQWTLANLHERLDALKHDPWR
AYAHVRQRVTAALRKRLSDG
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaaactcagcgtgtaccgcagcaggcggcgcttcggcgaaacgccggagccc
gagggcgcgcggcggtcgccgcgccgcacgaaaggcgcgggccgcgcgggcgacgaatcg
aagcggcgcgcgcgcggcgatgcggcggcgtcgagccgcggcgagcgcgccgctcgccgt
ggccgcgcgcagcagccggcgcgcggcaggtccgcgcttcattacgtgatccaggagcat
cacgcgcgccgcttgcattacgactttcgtctcgaactcgatggcacgctcaaatcgtgg
gcgatcccgaaagggccgagcctcgatccttcggtcaagcggctcgcggtgcacgtcgag
gatcatccgctcgaatacgcggcgttcgagggcgagattccggaaggccattacggcgcg
ggctcggtgattgtctgggatcgcggcgcatggacgcccgccggtggcgtcgccgccgcg
cgcgccggctatcgcgcgggcaagctgagcttcacgctcgacggggacaagctgcacggc
ggctgggcgctcgtgcgcagccgcgggctgcgtgacagcggcggcaagcacgagcaatgg
ctgctgatcaaggaacgcgacggcgacgcgcgcgacgaagcggactacgacgtgctgcgc
gcacggccgggcagcgtgctcggcggcgcgcggtccgcgcgggcgaggcgcgggcgcgcg
gccgagccgacggagcgcgacgccgccgcgccgaagcgggcgcgcgcttcagtgccgaaa
gggcgcgccgaagcgaagacgagcgggcgtgcgccgcgcaccgtgtcgaacgggactgcg
ggcgcgggtaagggcgcaagcaagcgtgcaagcaagcgcgagggcacgaataccggaaac
ggcgcgagaagcggcaagggcaacggcaacggcaagggcgcgggcaagggcggggccaca
ccgcgccgcaaacgcaccgccgcgccgcagtcgttcgacgtcgattcggccgataccgat
tcacccgcggcgcgcggcctcgcgttgcccgccgggcttgccgcgcgcttcggcctgagc
ggcgcgaagcgcgcggcgctgccgcgcacgttgcggccgcaattggcgacgctcgtcgat
gcgccgccgcccggcaaagactggctatacgaagcgaagttcgacggctaccgcgtgctg
atccggatcgatcgcggcgcggcgtcccgcccgattgccgtctacacgcgcgaggggctc
gactggagcgcgaaattcgccgcgcagctcgacgcgctcgcgcgcctgccggtcgaccgg
ggctggctcgacggcgaggcggtcgtgctcgatcgcgcgggcgtgccggatttccaggcg
ctgcagaacgcgctcggcgccggacgctcgaacgatgtcacgctgttcctgttcgacgtg
ccgttcctgaacggcttcgacctgcgcggcgtgccgctcgaacggcggcgcgcgctgctc
gccgcgctcgtcgccgcgcatgcgagcgacgtgctgcgttactcggagagcctcgcgttc
gaggccgccgatctgctgacgggcgcgtgcgacgcggggctcgaagggttgatcggcaag
cggcgcgatggccggtacgtcgaggggcgctcgagatcgtggatcaagctgaagtgccgg
cgcaggcaggagttcgtgattggcggctacacggagccggccggacggcgcagcggattc
ggcgcgttgctgctcggcgtgtacgcccgggcgccgggcgacgagggcgacgagggcgaa
cgaaggacgcgcggcgcggccgaaacgcgcgacgagcggcgtcgtgcatcccacgcatcc
cgcacatcctgcacatcccgcgcgcccgatgccggcgcggcgcgcgcaccgcaggcgcgg
ccgctcgcgttgcgctacgtcggccgcgtcggcaccggcttcggcgagcgcacgcttcgc
gcgctcgcgcggacgctgcgcgagcacgagaccgggcggatgccgttcgcggacgtgccg
cgcgagcgcagcggcacgccggttcactgggtgaagcccgtgctcgtcgccgaatgcgaa
ttcgcggaatggacgggcgacggcatcgtccggcaggcgtcgttcgtcgggctgcgcgaa
gacaagccggcgcgcacgatcgttcgcgagcaaccgcaatccatggagacggaagccatg
aatgaacacgctgacaaacatacggatgaacataccgatgcacgcgccgaacgtcgcacc
ggcggacgcacgcggcgcaaagcacgtgacggcggcgcgcgcgacgcgccgccgcttgcc
cgccatccgaagcgcggcgatgcgggatcgtccgcgcgcaagggcgcgcgggacggggag
gcgggcaagcgcgccgccgcgggatcgtcgccttcgtcttcaccgtcgagttcgacttcg
acttcgccttcgatttcggcgtcacggcgcacgcgcgggggcggtcgttccgcctcgcgc
gatcgagccggcgatgcggacgaaggcgcgaacgaagacgcgaacgatcacgcgccgcgc
gagcgcgccggcgcgccgaaggtggcgggcgtgcgcgtctcgcatcccggccgcgtgatc
gatccgcacacgggcacgcgcaagctcgacctcgtcgaatactgggaatggatcgcgccg
tggctgctgccgcatctgaagggccggccggtgtcgctcgtgcgcgcgcccgccgacatc
ggcggcgagctgttcttccagaagcacgcggacaagctggagattccgaacgtcgcgctg
cacgcggggctcgacccgggccatgaggcgctcatcacgatcgacgatgtgaaggggctc
gtcggcgccgcgcaaatgggcacgatcgagctgcacacgtggaacgcgcacgtgtcgaac
atcgagaagccggaccgcgcggtgttcgacctcgacccggacccgtcgctcgactggcgc
gcggtgatcgaggccgcgcagctcacgcgcgcgctgctggacgagctcggcctcgtgtcg
ttctgcaagacgagcggcggcaaggggctgcacgtcgtcgtgccgctcgcgcgccatgcg
ggctgggacgacgtgaaggcgttcgcgcacgcggtggcgcggcacatggcggcgaccctg
cccgagcgcttcaccgcgacgatggggccgcgcaaccggaagggcaagatcttcgtcgac
tatctgcgcaacaaccgcggcgcgagcacgatcgccgcgtactcggtgcgcgcgaggccg
gggcttggcgtatcggtgccgatcgcatgggacgaactgccggatacgacgggcgccgcg
caatggacgctcgcgaacctgcacgagcgtctcgacgcgctgaagcacgacccgtggcgc
gcctatgcgcatgtgcggcaacgcgtgacggcggcgttgcggaagcggctgagcgatggg
tag
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