KEGG   Burkholderia pseudomallei HBPUB10134a: DR55_5522Help
Entry
DR55_5522         CDS       T03422                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bpsh  Burkholderia pseudomallei HBPUB10134a
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bpsh00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    DR55_5522 (ligD)
Enzymes [BR:bpsh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DR55_5522 (ligD)
DNA repair and recombination proteins [BR:bpsh03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DR55_5522 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
LinkDB All DBs
Position
2:2702194..2705697
Genome map
AA seq 1167 aa AA seqDB search
MAGKLSVYRSRRRFGETPEPEGARRSPRRTKGTGRAGDESKRRARGDAAASSRGERAARR
GRAQQPAPARGRSALHYVIQEHHARRLHYDFRLELDGTLKSWAIPKGPSLDPSVKRLAVH
VEDHPLEYAAFEGEIPEGHYGAGSVIVWDRGAWTPAGGIAAARAGYRAGKLSFTLDGDKL
HGGWALVRGRGLRDSGGKHEQWLLIKERDGDARDQADYDVLRARPGSVLGGARSARARRG
RAAEPTERDAAAPKRARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASKRASKREGTNT
GNGARSGKGSGKGAGEGAGEGVATSRRKRAAAPQSSDVDSADTDSPAARGLALPAGLAAR
FGLSGAKRAALPRTLRPQLATLVDAPPPGKDWLYEAKFDGYRVLIRIDRGAASCPIAVYT
REGLDWSAKFAAQLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSNDVTLF
LFDVPFLNGFDLRGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDAGLEG
LIGKRRDGRYVEGRSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAPGDEG
DEGERRTRGAAETRDERRRASHASRTSRTSRTSRAPDAGAARAPQARPLALRYVGRVGTG
FGERTLRALARTLREHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVRQA
SFVGLREDKPARTIVREQPQSMETEAMNEHADEHTDEHTDARAERRTGGRTRRKARDGGA
RDAPPLARHPKRGDAGSSARKGARDGEAGKRAAAGSSPSSSPSSSTSTSPSISASGRTRG
GGRSASRDRAGDADEGANEDANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVE
YWEWIAPWLLPHLKGRPVSLVRAPADIGGELFFQKHADKLEIPNVALHPGLDPGHEALIT
IDDVKGLVGAAQMGTIELHTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALL
DELGLVSFCKTSGGKGLHVVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNR
KGKIFVDYLRNNRGASTIAAYSVRARPGLGVSVPIAWDELPDTTGAAQWTLANLHERLDA
LKHDPWRAYAHVRQRVTAALRKRLSDG
NT seq 3504 nt NT seq  +upstreamnt  +downstreamnt
atggcgggaaaactcagcgtgtaccgcagcaggcggcgcttcggcgaaacgccggagccc
gagggcgcgcggcggtcgccgcgccgcacgaaaggcacgggccgcgcgggcgacgaatcg
aagcggcgcgcgcgcggcgatgcggcggcgtcgagccgcggcgagcgcgccgctcgccgt
ggccgcgcgcagcagccggcgccggcgcgcggcaggtccgcgcttcattacgtgatccag
gagcatcacgcgcgccgcttgcattacgactttcgtctcgaactcgatggcacgctcaaa
tcgtgggcgatcccgaaagggccgagcctcgatccttcggtcaagcggctcgcggtgcac
gtcgaggatcatccgctcgaatacgcggcgttcgagggcgagattccggagggccattac
ggcgcgggctcggtgattgtctgggatcgcggcgcatggacgcccgccggtggcatcgcc
gccgcgcgcgccggctatcgcgcgggcaagctgagcttcacgctcgacggggacaagctg
cacggcggctgggcgctcgtgcgcggccgcgggctgcgtgacagcggcggcaagcacgag
caatggctgctgatcaaggaacgcgacggcgacgcgcgcgaccaagcggactacgacgtg
ctgcgcgcacggccgggcagcgtgctcggcggcgcgcggtccgcgcgggcgaggcgcggg
cgcgcggccgagccgacggagcgcgacgccgccgcgccgaagcgggcgcgcgcttcagtg
ccgaaagggcgcgccgaagcgaagacgagcgggcgtgcgccgcgcaccgtgtcgaacggg
actgcgggcgcgggtaagggcgcaagcaagcgtgcaagcaagcgcgagggcacgaatacc
ggaaacggcgcgagaagcggcaagggcagcggcaagggcgcgggcgagggcgcgggcgag
ggcgtggccacatcgcgccgcaaacgcgccgccgcgccgcagtcgtccgacgtcgattcg
gccgataccgattcacccgcggcgcgcggcctcgcgttgcccgccgggcttgccgcgcgc
ttcggcctgagcggcgcgaagcgcgcggcgctgccgcgcacgttgcggccgcaactggcg
acgctcgtcgatgcgccgccgcccggcaaagactggctatacgaagcgaagttcgatggc
taccgcgtgctgatccggatcgatcgcggcgcggcgtcctgcccgattgccgtctacacg
cgcgaggggctcgactggagcgcgaaattcgccgcgcagctcgacgcgctcgcgcgcctg
ccggtcgaccggggctggctcgacggcgaggcggtcgtgctcgatcgcgcgggcgtgccg
gatttccaggcgctgcagaacgcgctcggcgccggacgctcgaacgatgtcacgctgttc
ctgttcgacgtgccgttcctgaacggcttcgacctgcgcggcgtgccgctcgaacggcgg
cgcgcgctgctcgccgcgctcgtcgccgcgcatgcgagcgacgtgctgcgctactcggag
agcctcgcgttcgaggccgccgatttgctgacgggcgcgtgcgacgcggggctcgaaggg
ctgatcggcaagcggcgcgatggccggtacgtcgaggggcgctcgagatcgtggatcaag
ctgaagtgccggcgcaggcaggagttcgtgattggcggctacacggagccggccggacgg
cgcagcggattcggcgcgttgctgctcggcgtgtacgcccgggcgccgggcgacgagggc
gacgagggtgaacgaaggacgcgcggcgcggccgaaacgcgcgacgagcggcgtcgtgca
tcccacgcatcccgcacgtcccgcacatcccgcacatcccgcgcgcccgatgccggcgcg
gcgcgcgcaccgcaggcgcggccgctcgcgttgcgctacgtcggccgcgtcggcaccggc
ttcggcgagcgcacgcttcgcgcgctcgcgcggacgctgcgcgagcacgagaccgggcgg
atgccgttcgcggacgtgccgcgcgagcgcagcggcacgccggttcactgggtgaagccc
gtgctcgtcgccgaatgcgaattcgcggaatggacgggcgacggcatcgtccggcaggcg
tcgttcgtcgggctgcgcgaagacaagccggcgcgcacgatcgttcgcgagcaaccgcaa
tccatggagacggaagccatgaatgaacacgctgacgaacatacggatgaacataccgat
gcacgcgccgaacgtcgcaccggcggacgcacgcggcgcaaagcacgtgacggcggcgcg
cgcgacgcgccgccgcttgcccgccatccgaagcgcggcgatgcgggatcgtccgcgcgc
aagggcgcgcgggacggggaggcgggcaagcgcgccgccgcgggatcgtcgccttcgtct
tcaccgtcgagttcgacttcgacttcgccttcgatttcggcgtcagggcgcacgcgcggg
ggcggtcgttccgcctcgcgcgatcgagccggcgatgcggacgaaggcgcgaacgaagac
gcgaacgatcacgcgccgcgcgagcgcgccggcgcgccgaaggtggcgggcgtgcgcgtc
tcgcatcccggccgcgtgatcgatccgcacacgggcacgcgcaagctcgacctcgtcgaa
tactgggaatggatcgcgccgtggctgctgccgcatctgaagggccggccggtgtcgctc
gtgcgcgcgcccgccgacatcggcggcgagctgttcttccagaagcacgcggacaagctg
gagattccgaacgtcgcgctgcacccggggctcgatccgggccatgaggcgctcatcacg
atcgacgatgtgaaggggctcgtcggcgccgcgcaaatgggcacgatcgagctgcacacg
tggaacgcgcacgtgtcgaacatcgagaagccggaccgcgcggtgttcgacctcgacccg
gacccgtcgctcgactggcgcgcggtgatcgaggccgcgcagctcacgcgcgcgctgctg
gacgagctcggcctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtcgtc
gtgccgctcgcgcgccatgcgggctgggacgatgtgaaggcgttcgcgcacgcggtggcg
cggcacatggcggcgaccctgcccgagcgcttcaccgcgacgatggggccgcgcaaccgg
aagggcaagatcttcgtcgactatctgcgcaacaaccgcggcgcgagcacgatcgccgcg
tactcggtgcgcgcgaggccggggcttggcgtatcggtgccgatcgcatgggacgaactg
ccggatacgacgggcgccgcgcaatggacgctcgcgaacctgcacgagcgtctcgacgcg
ctgaagcacgacccgtggcgcgcctatgcgcatgtgcggcaacgcgtgacggcggcgttg
cggaagcggctgagcgatgggtag

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