Burkholderia pseudomallei A79A: X996_5293
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Entry
X996_5293 CDS
T03498
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpso
Burkholderia pseudomallei A79A
Pathway
bpso03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
X996_5293 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpso03400
]
X996_5293 (ligD)
Enzymes [BR:
bpso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
X996_5293 (ligD)
DNA repair and recombination proteins [BR:
bpso03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
X996_5293 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AIV92540
LinkDB
All DBs
Position
2:2347834..2351298
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AA seq
1154 aa
AA seq
DB search
MAGKLSVYRSRRRFGETPEPEGARRSPRRTKGTGRAGDESKRRARGDAAASSRGERAARR
GRAQQPARGRSALHYVIQEHHARRLHYDFRLELDGTLKSWAIPKGPSLDPSVKRLAVHVE
DHPLEYAAFEGEIPEGHYGAGSVIVWDRGAWTPAGGVAAARAGYRAGKLSFTLDGDKLHG
GWALVRGRGLRDSGGKHEQWLLIKERDGDARDQADYDVLRARPGSVLGGARSARARRGRA
AEPTERDAAAPKRARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASKRASKREGTNTGN
GARSGKGNGNGKGAGAGKGAGKGGATSRRKRAAAPQSFDVDSADTDSPAARGLALPAGLA
ARFGLSGAKRAALPRTLRPQLATLVDAPPPGKDWLYEAKFDGYRVLIRIDRGAASRPIVV
YTREGLDWSAKFAAQLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSNDVT
LFLFDVPFLNGFDLRGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDAGL
EGLIGKRRDGRYVEGRSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAPGD
EGDEGDEGERRTRGAAETRDERRRASHASRTSRTSRAPDAGAARAPQARPLALRYVGRVG
TGFGERTLRALARTLREHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVR
QASFVGLREDKPARTIVREQPQSMETEAMNEHADEHTDEHTDARAERRTGGRTRRKARDD
GARDAPALARHPKRGDAGSSPSSSPSSSTSTSPSISASGRTRGGGRSASRDRAGDADEGA
NEGANEDANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVEYWEWIAPWLLPHL
KGRPVSLVRAPADIGGELFFQKHADKLEIPNVALHPGLDPGHEALITIDDVKGLVGAAQM
GTIELHTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALLDELGLVSFCKTSG
GKGLHVVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNRKGKIFVDYLRNNR
GASTIAAYSVRARPGLGVSVPIAWDELPDTTGAAQWTLANLHERLDALKHDPWRAYAHVR
QRVTAALRKRLSDG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaaactcagcgtgtaccgcagcaggcggcgcttcggcgaaacgccggagccc
gagggcgcgcggcggtcgccgcgccgcacgaaaggcacgggccgcgcgggcgacgaatcg
aagcggcgcgcgcgcggcgatgcggcggcgtcgagccgcggcgagcgcgccgctcgccgt
ggccgcgcgcagcagccggcgcgcggcaggtccgcgcttcattacgtgatccaggagcat
cacgcgcgccgcttgcattacgactttcgtctcgaactcgatggcacgctcaaatcgtgg
gcgatcccgaaagggccgagcctcgatccttcggtcaagcggctcgcggtgcacgtcgag
gatcatccgctcgaatacgcggcgttcgagggcgagattccggaaggccattacggcgcg
ggctcggtgattgtctgggatcgcggcgcatggacgcccgccggtggcgtcgccgccgcg
cgcgccggctatcgcgcgggcaagctgagcttcacgctcgacggggacaagctgcacggc
ggctgggcgctcgtgcgcggccgcgggctgcgtgacagcggcggcaagcacgagcaatgg
ctgctgatcaaggaacgcgacggcgacgcgcgcgaccaagcggactacgacgtgctgcgc
gcacggccgggcagcgtgctcggcggcgcgcggtccgcgcgggcgaggcgcgggcgcgcg
gccgagccgacggagcgcgacgccgccgcgccgaagcgggcgcgcgcttcagtgccgaaa
gggcgcgccgaagcgaagacgagcgggcgtgcgccgcgcaccgtgtcgaacgggactgcg
ggcgcgggtaagggcgcaagcaagcgtgcaagcaagcgcgagggcacgaataccggaaac
ggcgcgagaagcggcaagggcaacggcaacggcaagggcgcgggcgcgggcaagggcgcg
ggcaagggcggggccacatcgcgccgcaaacgcgccgccgcgccgcagtcgttcgacgtc
gattcggccgataccgattcacccgcggcgcgcggcctcgcgttgcccgccgggcttgcc
gcgcgcttcggcctgagcggcgcgaagcgcgcggcgctgccgcgcacgttgcggccgcaa
ctggcgacgctcgtcgacgcgccgccgcccggcaaagactggctatacgaagcgaagttc
gatggctaccgcgtgctgatccggatcgatcgcggcgcggcgtcccgcccgattgtcgtc
tacacgcgcgaggggctcgactggagcgcgaaattcgccgcgcagctcgacgcgctcgcg
cgcctgccggtcgaccggggctggctcgacggcgaggcggtcgtgctcgatcgcgcgggc
gtgccggatttccaggcgctgcagaacgcgctcggcgccggacgctcgaacgatgtcacg
ctgttcctgttcgacgtgccgttcctgaatggcttcgacctgcgcggcgtgccgctcgaa
cggcggcgcgcgctgctcgccgcgctcgtcgccgcgcatgcgagcgacgtgctgcgttac
tcggagagcctcgcgttcgaggccgccgatctgctgacgggcgcgtgcgacgcggggctc
gaagggctgatcggcaagcggcgtgatggccggtacgtcgaggggcgctcgagatcgtgg
atcaagctgaagtgccggcgcaggcaggagttcgtgattggcggctacacggagccggcc
ggacggcgcagcggattcggcgcgttgctgctcggcgtgtacgcccgggcgccgggcgac
gagggcgacgagggcgacgagggcgaacgaaggacgcgcggcgcggccgaaacgcgcgac
gagcggcgtcgtgcatcccacgcatcccgcacatcccgcacatcccgcgcgcccgatgcc
ggcgcggcgcgcgcaccgcaggcgcggccgctcgcgttgcgctacgtcggccgcgtcggc
accggcttcggcgagcgcacgcttcgcgcgctcgcgcggacgctgcgcgagcacgagacc
gggcggatgccgttcgcggacgtgccgcgcgagcgcagcggcacgccggttcactgggtg
aagcccgtgctcgtcgccgaatgcgaattcgcggaatggacgggcgacggcatcgtccgg
caggcgtcgttcgtcgggctgcgcgaagacaagccggcgcgcacgatcgttcgcgagcaa
ccgcaatccatggagacggaagccatgaatgaacacgctgacgaacatacggatgaacat
accgatgcacgcgccgaacgtcgcaccggcggacgcacgcggcgcaaagcacgtgacgac
ggcgcgcgcgacgcgccggcgcttgcccgccatccaaagcgcggcgatgcgggatcgtcg
ccttcgtcttcaccgtcgagttcgacttcgacttcgccttcgatttcggcgtcagggcgc
acgcgcgggggcggtcgttccgcctcgcgcgatcgagccggcgatgcggacgaaggcgcg
aacgaaggcgcgaacgaagacgcgaacgatcacgcgccgcgcgagcgcgccggcgcgccg
aaggtggcgggcgtgcgcgtctcgcatcccggccgcgtgatcgatccgcacacgggcacg
cgcaagctcgacctcgtcgaatactgggaatggatcgcgccgtggctgctgccgcatctg
aagggccggccggtgtcgctcgtgcgcgcgcccgccgacatcggcggcgagctgttcttc
cagaagcacgcggacaagctggagattccgaacgtcgcgctgcacccggggctcgatccg
ggccatgaggcgctcatcacgatcgacgatgtgaaggggctcgtcggcgccgcgcaaatg
ggcacgatcgagctgcacacgtggaacgcgcacgtgtcgaacatcgagaagccggaccgc
gcggtgttcgacctcgacccggacccgtcgctcgactggcgcgcggtgatcgaggccgcg
cagctcacgcgcgcgctgctggacgagctcggcctcgtgtcgttctgcaagacgagcggc
ggcaaggggctgcacgtcgtcgtgccgctcgcgcgccatgcgggctgggacgatgtgaag
gcgttcgcgcacgcggtggcgcggcacatggcggcgaccctgcccgagcgcttcaccgcg
acgatggggccgcgcaaccggaagggcaagatcttcgtcgactatctgcgcaacaaccgc
ggcgcgagcacgatcgccgcgtactcggtgcgcgcaaggccggggcttggcgtatcggtg
ccgatcgcatgggacgaactgccggatacgacgggcgccgcgcaatggacgctcgcgaac
ctgcacgagcgtctcgacgcgctgaagcacgacccgtggcgcgcctatgcgcatgtgcgg
caacgcgtgacggcggcgttgcggaagcggctgagcgatgggtag
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