Bordetella petrii: Bpet3441
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Entry
Bpet3441 CDS
T00637
Name
(GenBank) unnamed protein product
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpt
Bordetella petrii
Pathway
bpt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bpet3441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpt03400
]
Bpet3441
Enzymes [BR:
bpt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bpet3441
DNA repair and recombination proteins [BR:
bpt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bpet3441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CAP43784
UniProt:
A9HXI5
LinkDB
All DBs
Position
complement(3631855..3634323)
Genome browser
AA seq
822 aa
AA seq
DB search
MADSLKRYREKRDFKQTPEPADGGQANEGARAFVVQKHWASRLHYDFRLELDGAMKSWAV
PKGPSFDPSVKRMAVQVEDHPIAYNQFEGEIPKGQYGAGKVIIWDEGVWVPVGNPRQGYR
DGHLKFDLHGAKLRGRWALIRMKGRETEKQPPWLLIKDRDGEARSEREFSVVDEMPDSVV
PLRKRRAQTASARNNAKKKTADNARDGIPGKPADLPEEFKPQLATLVDGPPRGGDWLYEV
KYDGYRILARLEDGKARLYTRNGHDWTARLPHLARAIGQLDVPSAWIDGEIVVLADNGAP
SFQALQNAFDRKRPAAIVYYVFDMPYVAGRDVRAEPLHARRAWLRQLVAANAAALQDTVR
FSETLDATPSQLVASACKMGLEGIIGKRRDASYVSRRSDSWIKLKCAQRQEFVIVGYTSP
QGARQGFGALLLAVHDKDGQLRYAGKVGTGFDTQGLESLARQLQALAVADSPLAAAAKAP
RGAHWVKPQLIAEVSFAEWTASGHVRQASFRGLRSDKPPQAIERETPVPARASRLTHPER
VIDSSTGLTKLDLARYYGLVAPLLLEHLRGRPVSFLRAPAGIGGELFFQKHPDTASLPGV
RSLPPSLDPGHAPLVEVATLEGIMSATQMNVVEFHTWNAVKTAIGKPDRMLFDLDPGEGV
KWAAVRQAAELVHVLLRELGLQAWLKTSGGKGLHVVVPLRRQYDWDAVKGFSQAVVQHLA
KTVPQLFVAKSGPRNRVGKVFADYLRNGFGATTVAAWSARARPGMGISVPLGWDELASLE
RSDQWTVANIHTRLDVGNAPWDDYAPQALGAAMKALGYRPGR
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggcagactccctgaagcgttaccgcgagaagcgcgatttcaagcagacgcccgaaccg
gccgatggcggccaggccaatgagggggcgcgcgcgtttgtcgtgcagaagcactgggcc
agccgcttgcactacgacttccggctggaactcgatggcgcgatgaaaagctgggcggtg
cccaagggccccagtttcgatccatcggtcaagcgcatggccgtccaggtagaagaccac
cccattgcctacaaccagttcgagggggaaatccccaagggccagtatggcgcgggcaag
gtcatcatatgggacgagggcgtgtgggtgccggtaggcaacccccgccagggttaccgc
gacgggcacctgaagttcgacctgcacggcgccaagttgcgcgggcgctgggccctgata
cgcatgaagggccgcgaaaccgagaaacagcccccctggctgttgatcaaggaccgcgat
ggcgaggcgcgcagcgaacgcgagttctcggtggtggacgaaatgcccgacagcgtcgtg
cctttgcgcaagcgccgggcacagacagcgtcggcccgcaacaacgcgaagaaaaaaacg
gccgacaacgcgagggacggcatacccggcaagcccgccgacctgcccgaggaattcaag
ccgcagctcgccaccctggtcgacggtccgccgcgcggcggcgactggctgtacgaggtc
aagtacgacggctatcgcatcctggcccgcctggaagatggcaaggcgcggttgtatacg
cgcaatggccacgactggaccgcgcgcctgccgcacctggcccgggccattggccagctg
gatgtgccgtcggcctggatcgatggcgagatcgtggtactggccgacaacggcgcgccc
agcttccaggctctgcagaatgccttcgaccgcaagcggcccgccgccattgtgtactac
gtgttcgacatgccgtacgtggcggggcgcgacgtgcgggccgagccgctgcacgcccgg
cgcgcctggctgcgccagctggtggccgccaacgccgccgccctgcaggatacggtgcgc
ttcagcgagaccctggatgccaccccctcgcaactggtggcgtcggcctgcaagatgggt
ctggagggaatcatcggcaagcgccgggacgcctcgtatgtatcgcggcgcagcgatagc
tggatcaagctcaagtgcgcccagcgccaggaattcgtaatcgtggggtatacctcgccg
cagggcgcgcgccagggattcggcgcgttgctgctggccgtgcacgacaaggacggccag
ttgcgctacgcgggcaaggtcggcaccgggttcgacacgcaggggctggaatcgctggcg
cggcagttgcaggcgctggcagtggccgacagcccgctggcggcggccgccaaggcgccg
cgcggcgcgcattgggtcaagccgcaactgatcgccgaagtttcgttcgccgaatggacg
gcgtcgggccatgtacggcaggcgtcgtttcgcgggttgcgcagcgacaagccgccgcag
gcgatcgagcgcgaaaccccggtgccggcgcgcgcctcgcggctgacgcatcccgagcgc
gtcatcgattcgagcaccggccttaccaagctcgacctggcgcgctactacggcctggtg
gcgcccttgctgctggagcacctgcgcgggcggccggtgtctttcctgcgggcgccggcc
ggcatcgggggtgaattgttcttccagaagcaccctgacaccgcttcgctgccgggcgtg
cggtcattgccgcccagcctggatccgggccatgccccattggtggaggtggccaccctg
gaaggcatcatgtcggccacgcagatgaacgtggtggagttccacacctggaatgccgtc
aagaccgcgatcggcaagcccgaccgcatgctgttcgacctggacccgggcgaaggagtg
aagtgggcggccgtgcggcaggcggctgagctggtgcatgtgctgctgcgcgagctggga
ctgcaagcgtggctgaagaccagcggcggcaagggcctgcacgtggtggtgccgctgcgt
aggcagtacgactgggacgcggtgaaaggtttctcgcaggccgtcgtgcagcacctggcc
aaaaccgtgccgcaactgttcgtggccaaaagcgggccgcgcaaccgggtcggcaaggtt
ttcgccgactacctgcgcaacggcttcggcgccaccaccgtggcggcctggtcggcgcgc
gcccggccaggcatgggcatctcggtgccgctgggctgggacgagctggccagcctcgaa
cgcagcgatcaatggacggtcgccaacatccacacgcggctggacgtgggcaacgcgccc
tgggacgactacgcgccccaggcgctgggcgcggcgatgaaggcgctgggttaccggccc
ggccggtga
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