Bacillus pumilus SH-B9: UP12_13055
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Entry
UP12_13055 CDS
T04776
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bpus
Bacillus pumilus SH-B9
Pathway
bpus03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bpus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
UP12_13055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpus03400
]
UP12_13055
Enzymes [BR:
bpus01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
UP12_13055
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
UP12_13055
DNA repair and recombination proteins [BR:
bpus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
UP12_13055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AMM98230
LinkDB
All DBs
Position
complement(2605637..2606470)
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AA seq
277 aa
AA seq
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MPELPEVETVRRTLKRLVEGKTIETVDIKWPNIIKRPGEPEEFARRMVGETIQTIERRGK
FLLFHLDHYVMVSHLRMEGKYRVHEAHEPYDKHVHVVFTFTDGTELRYHDVRKFGTMHLF
QPGEEEKELPLSQLGYEPFDKHFTPEYLWEQLKKTTRVVKTALLDQKIVVGLGNIYVDEV
LFKSGIHPETKANQLSLESCKVLHKQIIDTLQVAVDAGGSTIRSYINSQGDIGTFQLQLL
VYDRRGEPCQTCGSIIEKTVVGGRGTHFCVTCQKRPQ
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccagaagttgaaaccgtccggcgcactctcaagcggttagtcgaaggg
aaaacgattgaaacggtcgatatcaaatggccaaacatcatcaaacgtcctggggagccg
gaagagttcgcaagaagaatggtaggagaaaccatacaaaccattgaaagaagagggaag
ttcctcctctttcatttagaccattatgtgatggtctcccatttaaggatggaagggaaa
taccgtgtacatgaagcgcatgagccttacgataaacacgtacacgtcgtctttacgttt
acagatgggacggagcttcggtaccatgatgtgcgtaaatttggcacgatgcacttattt
cagccgggtgaagaggaaaaggaactcccgctatcacagctaggatatgaaccatttgat
aaacatttcactcctgagtatttatgggagcaattgaaaaaaacaacccgcgtggtcaaa
acagcgctgcttgatcaaaagattgtcgtaggacttggtaacatttacgtagatgaggtc
ctgtttaaatcagggattcatccagaaacgaaagcgaatcagctcagcctggaatcctgc
aaagtgcttcacaaacagatcatcgatacgcttcaagtggcggtagatgcgggcggaagt
acgattcgttcttatatcaactcacaaggagatattggcacatttcagctgcagcttctt
gtatatgaccggcggggagagccttgccaaacatgcggaagtatcattgagaaaacagta
gtcggagggcgcggcacgcacttttgtgtgacctgccaaaaacgtccccaataa
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