Burkholderia pyrrocinia: ABD05_00025
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Entry
ABD05_00025 CDS
T03962
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpyr
Burkholderia pyrrocinia
Pathway
bpyr03030
DNA replication
bpyr03410
Base excision repair
bpyr03420
Nucleotide excision repair
bpyr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABD05_00025 (ligA)
03410 Base excision repair
ABD05_00025 (ligA)
03420 Nucleotide excision repair
ABD05_00025 (ligA)
03430 Mismatch repair
ABD05_00025 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpyr03032
]
ABD05_00025 (ligA)
03400 DNA repair and recombination proteins [BR:
bpyr03400
]
ABD05_00025 (ligA)
Enzymes [BR:
bpyr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABD05_00025 (ligA)
DNA replication proteins [BR:
bpyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABD05_00025 (ligA)
DNA repair and recombination proteins [BR:
bpyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABD05_00025 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABD05_00025 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABD05_00025 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABD05_00025 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
MctB
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AKL98723
UniProt:
A0A0G3WK92
LinkDB
All DBs
Position
1:complement(5090..7165)
Genome browser
AA seq
691 aa
AA seq
DB search
MARTQAEPPASQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPD
LVTPDSPTQRVGGEAAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALDKTTDLAGS
VTEPVEYACELKFDGLAISLRYERGVFVQASTRGDGTTGEDVTANVRTIRSIPLKLKGEN
VPAVLDVRGEVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFF
AYGIGVLDGMPMPDTHSALLDWYEALGLPVNRERAVVHGAGGLLGFFGKIGEKRESLPYD
IDGVVYKVNRRDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARL
DPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFV
MPTECPVCGSKIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLV
DLNLVRTPADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGES
TAKDLAKHFGSLTPIMDASIDELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVT
WPEGPPAPKAPQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGA
EAGSKLVKAEELGIPVLDEDGLHQLLEGNTP
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaacccaagccgaaccgccagccagccagcccgacgcgcgcgccgcgtggctg
cgcgaccaactcgagcgggcgaactacgcctactacgtgctcgaccagccggatctgccc
gacgccgaatacgaccggctgtttcgcgaactgcagcagctcgaaaccgaccatcccgat
ctcgtgacgcccgattcgccgacgcagcgcgtcggcggcgaagcggccggcggcttcacg
ccggtcgtccacgacgcgccgatgctgtcgctgaacaacggtttcgccgacgaggacatc
gccgcgttcgacaagcgcgtcgccgatgcgctcgacaagacgaccgatctcgccggctcg
gtgacggagcccgtcgaatacgcgtgcgagctcaagttcgacggcctcgcgatctcgctg
cgctacgagcgcggcgtgttcgtgcaggcgtcgacgcgcggcgacggcacgacgggcgag
gacgtgaccgcgaacgtgcgcacgatccggtcgatcccgctgaagctgaagggcgagaac
gtgccggccgtgctcgacgtgcgcggcgaggtgctgatgttcaagcgcgatttcgcacgc
ctgaacgaacgccagcgcgcggccgagcagcgcgaattcgcgaacccgcgcaacgcggcg
gccggcagcctgcgccagctcgactcgaagatcaccgcgcagcgtccgctgtcgttcttc
gcatacggaatcggcgtgctcgacgggatgccgatgcccgacacgcacagcgcgctgctc
gactggtacgaagcgctcggcctgccggtgaaccgcgagcgcgcggtcgtgcacggcgcc
ggcggattgctcggcttcttcggcaagatcggcgagaagcgcgagtcgctgccgtacgac
atcgacggcgtcgtctacaaggtcaatcggcgcgacgagcaggagcgcctcggcttcgtg
tcgcgcgcgccgcgcttcgcgctcgcgcacaagttccccgcgcaggaagcgctgacgaag
ctcgtcgcgatcgacgtgcaggtcggccgcaccggcgcgatcacgccggtcgcgcgcctc
gatcccgtgttcgtcggcggcgcgaccgtgaccaacgcgacgctgcacaacgaggacgag
gtgcgccgcaaggacatccggatcggcgataccgtgatcgtgcgacgcgcgggcgacgtg
atccccgaggtggtcggcgcgctgctcgaccggcgtccggacgatgcagccgaattcgtg
atgccgaccgaatgcccggtgtgcggctcgaagatcgagcgcctgccggacgaggcgatc
gcgcgctgcaccggcggcctgttctgcccggcgcagcgcaagcaggcgctgtggcacttc
gcgcagcgccgcgcgctcgacatcgacgggctcggcgagaagatcatcgaccagctcgtc
gacctgaatctcgtgcgcacgccggccgacctgttcaatctcgggttcgcgacgcttgcc
gagctcgaccggttcgccgagaagtccgcacagaatttgctcgactcgctcgagaaggcg
aagcacacgacgctcgcgcgcttcatctacgggctcggcatccgccatgtcggcgaatcg
accgcgaaggatctcgcgaagcacttcggctcgctgacgccgatcatggacgcgtcgatc
gacgagctgctcgaagtcaacgacgtcgggccgatcgtcgccgagtcgcttcaccagttc
ttcgcggaagagcacaaccggaccgtgatcgagcagttgcgcgcgccgggcaaggtgacg
tggcccgaagggccgcccgcgccgaaggcgccgcagggcgtgctggccggcaagaccgtc
gtgctgacgggcacgctgccgacgctcacgcgcgatgcggcaaaggagatgctcgaagcg
gcgggcgcgaaggtcgccggctcggtatcgaagaagacggattacgtggtcgcgggcgcc
gaagccggcagcaagctcgtgaaggccgaggaactcggcatccccgtgctggacgaagac
ggtctgcaccaactcctggagggcaatacgccatga
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