Bradyrhizobium sp. BF49: BF49_4877
Help
Entry
BF49_4877 CDS
T04337
Name
(GenBank) ATPdependent DNA ligase EC 6511 clustered with Ku protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brad
Bradyrhizobium sp. BF49
Pathway
brad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BF49_4877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brad03400
]
BF49_4877
Enzymes [BR:
brad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BF49_4877
DNA repair and recombination proteins [BR:
brad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BF49_4877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DUF4232
Motif
Other DBs
NCBI-ProteinID:
CUT13797
LinkDB
All DBs
Position
I:5020871..5023582
Genome browser
AA seq
903 aa
AA seq
DB search
MPKENPGPVVLQKLSKYRQKRDFEKTPEPSGKTAVAPSKQRRFVIQKHDATRLHYDLRLE
FDGVFKSWAVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWE
SEDPERGFKKGDLKFTLHGEKLHGSWVLVRMRNDRTGGKRTNWLLIKHRDEYVREGADND
ILEEDKSVASGRAMDQIAEGKGRAPKPFMLAKGTKAKADAVWQSNRADEAKERTVKPAPR
AALKTGKTAKKKATTATTAKKAEMPDFVAPQLCTSVERPPGGDGWCHEIKFDGYRVQLRV
EGGKATLKTRKGLDWTGKFASIAKEAGVLPDMMIDGEIVALDHNGAPNFSSLQAALSDGK
TDELIFFAFDLLFAEGLDLRPLPLGERKDRLKELLEARKKKSSQIRYVEHFESGGDAVLQ
SACKLELEGVVSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGYKTTNGKFRSLMAGVHRG
DHLAFVGMVGTGFGADKVKRIMPSLKAMEAKQSPFGGKNAPKKAREVHWLKPELVAEIEF
AGFTADGNIRQAAFKGLRQDKPAAEVEAETPVDTELAEPSTKQRAKAKTGARTAQAGGSA
EVMGVVISKPDKELWPDDGNGDPVTKLDLARYLEAVGEWMIVHLKGRPCSLIRAPDGIKG
ECFFQRHAMQGTSNLLELARVSGDRKPYLQIDRIEGLAAVAQIGGVELHPWNCAPYAYDT
PGRLVFDLDPAPDVVFAEVVEAAKEMRQRLTDIGMESFCKTTGGKGLHVVVPLRHGARDQ
VSWKEAKAFAQGVCQWMADDDPERYLLNMSKKLRTGKIFLDYLRNDRMSTAVAPLSPRAR
DGATVSMPVTWAQVKSDLDPKRYTVRKVPGLLARSKAWDGYDDAAASIKAAIKKLAAKKS
RVG
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
gtgccgaaagagaatccgggaccagtcgtgctgcaaaagctctccaagtatcgacagaaa
cgtgatttcgagaagacgccggagccgtcgggcaagaccgcggtggcgccgtcgaagcag
cggcgcttcgtgatccagaaacatgacgccacgcggctgcactacgatctgcggctcgag
ttcgacggcgtcttcaagtcctgggcggtgacgaaaggaccctcgctcgatccgcacgac
aagcggctggccgtcgaggtcgaggaccacccgctcgactatggcgacttcgagggcacg
attccggagggccagtacggcggcggcacggtcatgctgtgggaccgcggcacctgggaa
tctgaggatcccgaacgcggtttcaagaagggcgatctgaagttcaccctgcatggcgag
aagctgcacggcagctgggtcctggtgcgcatgcgcaacgaccgcaccggcggcaaacgg
accaattggctcttgatcaagcatcgcgacgaatatgttcgcgagggcgcagacaacgac
attctcgaggaggacaaatcggtcgcctccggccgcgcgatggatcagatcgccgaaggc
aaggggcgagcaccaaaaccgttcatgctggcgaagggcaccaaggccaaggccgacgcg
gtctggcagtccaaccgggcggacgaggcgaaagagcgcacggtcaagccggcaccccgc
gcggcgttgaagaccggcaagacggcaaagaagaaagcaacaaccgcgacgaccgcgaag
aaggcggagatgccggatttcgtcgcgccgcagctctgcacctcggtcgagcgcccgccg
ggcggcgatggctggtgccacgagatcaagttcgacggctaccgcgtgcagctgcgggtc
gagggcggcaaggcgacgctgaagacgcgcaaaggcctcgactggaccggaaaattcgca
agcatcgcgaaggaagcgggcgtgttgccggatatgatgatcgacggcgagatcgtcgcg
ctcgaccataatggggcaccgaacttttcgtcgcttcaggccgcgctgtcggacggcaag
accgacgagctcatctttttcgccttcgacctcctgttcgccgaagggctcgatttgcgg
ccgctgccgctcggggagcgcaaggaccgcctcaaggagctcctggaggcacgcaagaag
aaatcaagccagatccgctatgtcgagcatttcgaaagcggcggcgacgcggtgctgcaa
tcggcctgcaagctcgagctcgagggcgtggtgtcgaagaagctcgatgcgccttatcgt
tcggggcggacagaaagctggaccaaggccaaatgccgcgccggccatgaggtcgtgatc
ggcggctacaagaccaccaatggcaaattccgttcgctgatggccggcgtgcaccgcggc
gatcatctcgccttcgtcggcatggtcggcaccggcttcggcgcggacaaggtcaagcgc
atcatgccgtccttgaaggccatggaggccaagcaaagccccttcggcggcaagaacgca
ccgaaaaaggcgcgcgaggtgcactggctgaagccggagctcgtggcggagatcgagttc
gccggcttcaccgccgacggcaatatccgccaggccgccttcaagggtctgcggcaggac
aagccggcggcggaggtcgaggccgagacaccggtcgataccgagcttgccgagccctcg
acgaagcagcgcgcgaaagcgaagaccggcgcgcgaacggcccaggccggcggcagtgcc
gaagtgatgggagtcgtcatttccaagccggacaaggagctctggccggacgacggcaat
ggcgatcccgtcaccaagctggatctcgcgcgctatctcgaagccgtcggcgaatggatg
atcgtccacctgaagggccgtccgtgctcgctgatccgcgcccctgacggcatcaagggc
gaatgcttcttccagcgccacgccatgcagggcacctcgaaccttctggagctcgcgcgg
gtctccggcgaccgcaagccctatttgcagatcgaccgcatcgaagggctcgccgccgtg
gcgcagattggcggcgtcgagctgcatccctggaattgcgcgccctacgcctacgatacc
ccgggccggctggtgttcgatctcgatccggcgcccgacgtcgtcttcgccgaggtcgtc
gaggccgccaaggagatgcggcagcggctgaccgacatcggcatggaaagcttctgcaag
accaccggcggcaagggcctgcacgtcgtggtaccgctgcgtcatggcgcccgcgatcag
gtgagctggaaagaggcgaaggccttcgcgcaaggcgtttgccagtggatggcggacgac
gatcccgagcgctatctgctcaacatgtcgaagaagctgcgaacgggaaagatcttcctg
gactatttgcgcaacgatcgcatgtcgacggcggtggccccgctgtccccccgcgcgcgc
gatggtgcgactgtgtcgatgccggtcacgtgggctcaggtgaagagcgaccttgatccg
aagcggtacacggtacgaaaggtgccgggcttgctggcgcgatcgaaggcgtgggatggc
tacgacgatgcagccgcgtcgatcaaggcggcgatcaagaagctcgcggcgaaaaagagt
agggtgggttag
DBGET
integrated database retrieval system
