Bradyrhizobium sp. CCGE-LA001: BCCGELA001_09220
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Entry
BCCGELA001_09220 CDS
T04273
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brc
Bradyrhizobium sp. CCGE-LA001
Pathway
brc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BCCGELA001_09220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brc03400
]
BCCGELA001_09220
Enzymes [BR:
brc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BCCGELA001_09220
DNA repair and recombination proteins [BR:
brc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BCCGELA001_09220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AMA56413
UniProt:
A0A0X8CFL2
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All DBs
Position
1928833..1931520
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AA seq
895 aa
AA seq
DB search
MLQKLSTYRQKRDFEKTPEPSGKSAVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESDDPEAGFK
KGDLKFTLHGEKLQGSWVLVRMRNDRTGGKRTNWLLIKHRDEHVREGADNDILDQDKSVA
SGRAMEQIAEGKGRAPKPFMLAKGAKGKADAVWQANRAEETKGRTVKPAPRTALKPAKSA
RKKATTATNAKKVSEMPDFVAPQLCTLVERPPADQGWCHEIKFDGYRVQLRVEDGEATLK
TRKGLDWTEKFAAIAKEASALPDVMIDGEIVALDHNGAPNFSSLQAALSDGKTDELIFFA
FDLLFAKGEDYRRLPLGERKAELKKLLDSRRRKSTQIRYVEHFESGGDAVLQSACKLELE
GVVSKKLDAPYRSGRTEGWVKSKCRAGHEVVIGGYKTTNGKFRSLMAGVQRGDHLAFVGM
VGTGFGADKVKRLMPSLKAMTAKESPFGGKNAPKKTREVHWLKPELVAEIEFAGFTADGN
IRQAAFKGLRQDKPAEEVEAERPVDTELAEPTAKKAPARSRAKAGRQPKQAAQNVEVMGV
VISKPDKQLWPDDGDGDPVTKLDLARYLEAVGEWMIVHLKGRPCSLIRAPDGIKGECFFQ
RHAMQGTSNLLELARVSGDRKPYLQIDRIEGLAAVAQIGGVELHPWNCAPYAYDTPGRLV
FDLDPAPDVEFADVVEAAKEMRQRLADIGMDSFCKTTGGKGLHVVVPLLHGARDKVSWKE
AKAFAQGVCQWMADDDPERYLLNMSKKLRKGKIFLDYLRNDRMSTAVAPLSPRARAGATV
SMPVTWAQVKSDLDPKRYTMRTVPALLARSKAWEGYDDAAVSIKAAIKKLAGKVK
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcaaaaactctccacttaccgacagaagcgtgacttcgagaagacgcccgagccg
tcgggcaagtccgcggtggcgccgtcgaagcagcggcgcttcgtgatccagaagcatgat
gcgacccgactgcattatgatctcaggctcgagttcgacggcgtgttcaagtcctgggcg
gtgacgaagggaccctcgctcgatccgcacgacaagcggctggccgtcgaggtcgaggac
catccactcgattacggtgatttcgaaggcacgattccggaagggcagtatggtggcggc
acggtgatgctgtgggaccgtggcacctgggaatcggatgatccggaagccggcttcaag
aagggcgatctgaagttcacgctgcatggcgagaagctgcagggcagctgggtgctggtg
cgcatgcgcaacgaccgcaccggcggtaagcgcaccaactggctcctcatcaagcaccgc
gacgagcatgttcgcgaaggcgcggacaacgatattctcgaccaggacaagtccgtcgcc
tccggccgcgcgatggagcagatcgccgagggcaagggccgcgcgccaaagccgttcatg
ctggcgaagggcgccaagggcaaggccgacgcggtctggcaggccaaccgcgcggaggag
acgaaggggcgtacggtcaagccggctccgcgcacggcgttgaagcccgccaaatcggcg
cggaagaaggcgacgacggcgaccaacgcgaagaaggtctcggagatgccggacttcgtc
gcgccacagctctgtacgctggtcgagcggccgccggccgatcagggctggtgccacgag
atcaagttcgacggctatcgcgtccagctgcgcgtcgaggatggcgaggcgacgctgaag
acgcgcaagggcctcgactggaccgagaagtttgccgccatcgccaaggaagcttccgcg
ctgccggacgtgatgatcgacggcgagatcgtcgcgctcgaccacaacggcgcgccgaac
ttctcctcgcttcaggccgcgctgtccgacggcaagactgacgaactgatcttctttgcc
ttcgaccttctgttcgcgaagggggaggattaccgccggctgccgctcggcgagcgcaag
gcggagctcaagaagctactggactcgcgcaggcggaaatcgacccagatccgctatgtc
gagcatttcgagagcggcggcgatgccgtgctgcaatcggcctgcaagctcgagctcgaa
ggtgtggtgtcgaagaagctggatgcgccctatcgttcggggcgcaccgagggctgggtc
aagtcgaaatgccgcgccggccacgaggtggtgatcggcggctacaagaccaccaacggc
aaattccgctccctgatggccggcgtgcagcgcggcgatcatctcgccttcgtcggcatg
gtcggcaccggcttcggcgcggacaaggtcaagcgcctcatgccgtcattgaaggccatg
acggccaaggaaagcccgttcggcggcaagaacgcgccgaagaagacccgcgaggtgcat
tggctgaagccggagctcgtcgccgagatcgagtttgccggcttcactgccgacggcaat
atccgccaggccgcgttcaagggcctgcgacaggacaagcctgccgaggaggtcgaggcc
gagaggcccgtcgatacagagcttgccgaaccgacagccaagaaggcaccggcgagatcg
cgtgcgaaggcgggccggcagccgaagcaggccgcccagaacgtcgaggtcatgggtgtc
gtcatctccaagcccgacaagcagctctggccggacgatggcgacggcgatcccgtcacc
aaactggaccttgcgcgctatctcgaagccgtcggcgaatggatgatcgtgcacctcaag
ggccggccctgctcgctgatccgcgcgcctgacggcatcaagggcgaatgcttcttccag
cgccatgccatgcagggcacgtcgaaccttttggagctagcgagggtctccggggaccgc
aagccgtatttgcagatcgaccggatcgaagggctcgcagcggtggcgcagatcggcgga
gtcgagctgcatccgtggaattgcgcgccctatgcctatgacacgccgggccggctggtg
ttcgatctcgacccggcacccgacgtggagtttgccgacgtcgtcgaggccgccaaggag
atgcggcagcggctcgccgatatcggcatggacagcttctgcaagaccaccggcggcaag
ggccttcacgtggtggtgccgctgctgcacggcgcgcgcgacaaggtgagctggaaggag
gccaaggcgtttgcgcaaggcgtctgccagtggatggccgatgacgatccggagcgctat
ctgctcaacatgtcgaagaagctgcgcaaggggaagatcttcctggactacttgcgcaac
gatcgcatgtcgaccgcggttgccccgctgtcgccccgcgcgcgcgccggcgccaccgtg
tcgatgccggtgacctgggcgcaggtcaagagtgatctcgatccgaagcgatatacgatg
cgcaccgtgccggccttgctggcgcgatcgaaagcgtgggagggttatgatgatgccgcc
gtatcgatcaaggcggcgatcaagaagctggcgggaaaggtgaagtga
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