Mycetohabitans rhizoxinica: RBRH_00476
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Entry
RBRH_00476 CDS
T01355
Name
(GenBank) ATP-dependent DNA ligase (EC 6.5.1.1)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brh
Mycetohabitans rhizoxinica
Pathway
brh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RBRH_00476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brh03400
]
RBRH_00476
Enzymes [BR:
brh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RBRH_00476
DNA repair and recombination proteins [BR:
brh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RBRH_00476
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Exo_endo_phos
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CBW76558
UniProt:
E5ATY4
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All DBs
Position
pBRH01:complement(139968..143339)
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AA seq
1123 aa
AA seq
DB search
MHHRSIRPLEIAIFNINGLRARLGQLLEWLEHEGPDVVCLQELKTPDERFPASDLERAGY
GALWRGQAAWSGVTILARGEQPRAVRRALPGFETDTHNRYLEVSVAGLLIASLYLPNDNP
QPGPKFDYKLAWFDKLIEHAATMVNDSRPVVLAGNYNVVLTDEDIYNPRSWLKDALLQPQ
SRQRYAQLLAQGWTDARRVLHPDKRNYTFWDDFRQHWQTHSGLRIEHLLLNRALAPALTA
AEVDIWGAASHKRATMHRPGLNCDGIGTRTAGRHTPSATHRPNARTETRMRKALDEYTRK
RDFDTTPEPPMQTGKSPARRGRANHALQFCVQKHDATQLHYDFRLELDGTLKSWAVPKGP
SLDPHVKRIAIHVEDHPLDYAAFEGHIPEGHYGAGDVIVWDRGVWVPDGDPAEAYRKGRL
TFRLDGEKLAGRWHLVRTRLKGKQEQWLLIKSDDNDARSESEYDIVQALPDSVLSDRTLR
PTTSARQLATRQAARKRQPETANDASAQAPLRKPVTTQNRRRSHWPALDGARAAPLPESL
KPALATLVDAAPAGHWRYEIKFDGYRILARIDGDEVKLFTRNGNDWTSKMPRQAEALSRL
GLDSAWLDGEVVVLDKAGLPNFQSLQNAFDARRSNGIVYYLFDVPYLNGMDLRNVPLEPR
RATLTALLEHHEGDVLRLSRDFDESPESMLDSACEIQLEGVIGKQAGSLYASRRTTDWIK
LKCKHRQEFVVVGYTEPRGSRQAFGALLLGLHDPDTGALRYAGKVGAGFSEATLQSVLGR
LDPLRTRHAALDNPPSRREATGVHWTRPELLAEVAYAEMTREGIIRHAVFRGLRTDKPAS
NIGPEHAVPADAIAAAPARRGRARAGPPADAPPDARAETETVRGVRITHPQRIIDSASAT
TKRELAEYYTSIASRILPHLKSRPVALVRAPDGITGELFFQKDAGKLPIPHIHMLDKACA
GQPVMTIDSAQALVGAAQMGAIELHTWNATTERLDQPDRFVLDLDPDPALPWKRMIEATQ
LTLAVLDELGLKSFLKTSGGKGIHLVVPLTPSQGWADVKGFTQALVQHMARQLPDRFSAV
SGPRNRVGRIFIDYLTQRPRRDDDRAVRGPRPSAVARFGSNPA
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
gtgcaccatcgaagcatccggccattggaaatcgctatctttaacattaacggcctgcgg
gcgcgactcggccaactgctggaatggctcgagcacgaggggcctgacgtggtctgcctg
caggaactgaagacacccgacgagcgctttccggcaagcgacctggagcgggccggctac
ggcgcgctctggcgcggccaggcagcgtggagcggggtcacgattctggcgcgtggcgag
cagccacgtgctgtgcgacgggcgctgcccggcttcgagaccgacacgcataaccggtac
ctggaagtcagcgtcgctggcttgctaatcgcgtcgttatacttgccgaacgacaatccg
cagcccggcccgaagttcgattacaagctcgcctggtttgacaagctgatcgagcacgcg
gcgacgatggtcaacgacagccggcccgtcgtgctagcaggtaactataacgtggtgctg
actgacgaggatatttacaacccccgctcgtggctgaaggatgcgttgctacagccgcag
agccggcaacgatatgcgcaactgctcgcgcaaggctggaccgacgcgcggcgcgtgttg
catcctgataagcggaactacacgttctgggatgacttccggcaacactggcagacccac
tccgggctgcgaatcgaacatctgctactcaaccgcgcgcttgcgccggcgttgaccgcc
gcggaggtagacatatggggcgcggccagtcacaagcgagcgaccatgcaccggcctgga
ttgaactgcgatgggatagggacgcggacggcgggccggcacaccccaagcgcaacacac
aggcccaacgcacgaacggagactaggatgcgcaaggcactggatgaatacacgcgtaag
cgcgacttcgacaccaccccagagccgccgatgcaaacaggcaagtccccagcacggcgg
ggacgggccaatcatgcattgcagttttgcgtgcagaagcacgacgcaacgcagttgcac
tacgacttccgcctcgagttggatggcacgttgaaaagctgggcggtcccaaaggggcct
agtctggacccgcatgtcaagcgcatcgcgatccatgtggaggatcacccactcgactat
gcggcgttcgaaggtcatattccagaaggccactatggcgcgggcgacgtgatcgtatgg
gaccgcggcgtctgggtgccagacggcgatcccgccgaggcctaccgaaaaggccggctg
acctttcgccttgacggcgaaaagctcgccggccgctggcatctcgtgcgcacccggctg
aaaggcaagcaagagcaatggctgctgatcaaatcggacgacaacgatgcgcgctccgaa
tccgagtacgatatcgtacaagcgctaccggacagcgtgctcagtgaccgcaccctgcgg
cccacgacatcggcccgacaactcgcgacgcgtcaggcggcgcgcaagcggcaacctgaa
acggcaaacgacgcgtcggcgcaagccccgctgcgcaagcccgtcacgacacagaaccgg
cgtaggtcccactggcccgcgctggacggtgcacgcgccgcgccgctgcccgaatcgctc
aaaccggcgctcgcgacgctggtggacgccgctccggccggccactggcggtatgaaatt
aagtttgatggctatcgaatcctggcgcggatcgacggcgatgaggtcaaactgttcacc
cgcaacggcaacgactggacctcgaagatgccgcgccaggcagaagcgctgagccgcctg
ggactcgactcggcatggctggacggcgaagtggtggtcctcgacaaagcaggactgccc
aacttccagtcattgcaaaacgcgttcgatgcgcggcgcagcaacgggattgtctattac
ttgttcgacgtgccttacttgaatggcatggacctgcgcaacgtgccgctagagccgcgc
cgtgccacgctgactgcgctgctcgagcaccatgaaggcgacgtgctgcggctgtcgcgt
gatttcgatgagtcaccggagtcgatgctcgacagcgcatgtgagatccaactcgagggc
gtgatcggcaagcaagctggcagcctgtacgcgtcgcgccgcaccaccgactggatcaaa
cttaaatgcaagcaccggcaggagttcgtcgtggtcggctacaccgagccgagaggcagc
cggcaggcattcggcgcattgctgctcggcctacacgatcccgataccggcgcactgcga
tacgcgggcaaagtcggcgccggattcagtgaagcgacgttgcaatctgtgctcgggcgg
ctagacccgctgcgcacgagacatgccgcgttggacaacccgccgagtagacgcgaggca
acgggcgtgcactggacccgacctgaattgcttgccgaggtggcctacgcagagatgacg
cgcgagggcatcatccgtcatgccgtctttcgcggattgcgcaccgataaaccagccagc
aacatcggaccagaacacgcagtgccggctgacgccattgcggcagcgcccgcacgtcgt
ggccgcgcgcgggccggtccaccggccgatgcgccacccgacgcacgcgccgagacggag
acggtccgcggcgtccggattacgcatccgcagcgcatcatcgattcggccagcgcgacg
accaagcgcgaactcgcggaatactacacatcgatcgcgtcgcgaatactgccgcatcta
aaatcgcgccccgtggcgctggtgcgcgcgccggacggcatcacgggcgagttgttcttt
cagaaggacgccggcaagctgccgattccccatatccacatgttggacaaggcctgcgcg
ggccagcctgtgatgacgatcgacagcgcgcaagcgctcgtcggggcagcacagatgggc
gccatcgagttgcatacatggaacgcgaccaccgagcggctcgaccagcccgaccgtttt
gtattagacctcgatccggacccggcgctaccgtggaaacgaatgatcgaggcaacacaa
ctcacactggccgtgctggacgaactcggcctgaaatcattcctgaaaaccagcggcggc
aaggggattcacctggtggtgccgttgacgccgtcgcagggatgggcagacgtgaaaggg
ttcacacaagcgcttgtccagcatatggcgcgacagctgccggaccgattctcggcggta
tccggcccgaggaaccgggtcggtcgtatttttatcgactatctgacgcaacggccaagg
cgsgacgacgatcgcgccgtacgcggtccgcgcccgagcgcagttgcccgtttcggttcc
aatccggcgtga
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