Mycetohabitans rhizoxinica: RBRH_02846
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Entry
RBRH_02846 CDS
T01355
Name
(GenBank) ATP-dependent DNA ligase (EC 6.5.1.1)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brh
Mycetohabitans rhizoxinica
Pathway
brh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RBRH_02846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brh03400
]
RBRH_02846
Enzymes [BR:
brh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RBRH_02846
DNA repair and recombination proteins [BR:
brh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RBRH_02846
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CBW74767
UniProt:
E5AQ85
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All DBs
Position
1145160..1146089
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AA seq
309 aa
AA seq
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MKDSEQRNLHETVAGVRISHPDRVMDPHTGTRKIDLVRYFEWVAPVLLPHLRARPVGLLR
APGGIDAELFFQRHSDRLAIPHVTQHEGLDPGHKPLITIDDTAALVGAAQMDVIELHTWN
AQLPAIEHPDRVVFDLDPDPALPWRAMLEAAERLRTVLADLSLRCWCKTSGGKGLHVVVP
LDSHASWDDTKAFSQRIARHMATVWSAQFGAKMGEPNRRGKIFVDYLRNSRGATTIAAYV
PRARPGGAVSMPLTWDEVPHTSSAAQWTLRNIAERLDRLGADPWAGYWSTRQRITAAMLE
RLEPGDESA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgaaagactcggagcaacgcaacttgcatgagacggtggcgggtgtgcggatttcgcat
cccgatcgggtgatggatccgcacaccggtacccgcaaaattgacctggttcgctatttc
gaatgggtggccccggtgttgctgcctcatctgcgcgcacggcctgtcgggttattgcgc
gcaccgggcgggatcgatgcagagttgtttttccaaaggcatagcgatcggcttgcgata
ccgcatgtcacgcagcacgaaggcctggaccctggacacaagccactgattaccatcgac
gatacggcggcgctggtgggggccgcccagatggacgtaatcgaactccatacatggaac
gcacagcttcctgccatcgaacatcccgaccgggtcgtctttgatcttgatcccgatcca
gcgttgccgtggcgcgctatgcttgaggccgccgaacgtttgcgcactgtgttggctgac
ctcagcttacggtgctggtgcaaaaccagcggcggaaaggggttgcatgtggtcgtcccg
ttggactcacacgccagttgggacgacaccaaggcgttctcgcagcgcattgcccgccat
atggccaccgtctggtcagcgcagtttggtgcaaaaatgggcgagccgaatcgccggggc
aagatcttcgtcgattacctgcgcaacagccgcggcgcaaccacgatcgccgcctacgta
ccgcgcgcccggccagggggggctgtgtcgatgcccctcacatgggacgaggtgcctcac
acgagcagcgcggcgcaatggacattgcgcaacatcgccgagcggctcgaccgattaggc
gcggacccctgggctggctattggagcacgcgccagcgcatcacagcggcgatgcttgag
cgcttggagccgggcgacgagagcgcctga
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