Brassica rapa (field mustard): 103830575
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Entry
103830575 CDS
T03449
Name
(RefSeq) putative DEAD-box ATP-dependent RNA helicase 29
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
brp03009
]
103830575
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103830575
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Helicases
103830575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
103830575
NCBI-ProteinID:
XP_009104633
UniProt:
M4CHK8
LinkDB
All DBs
Position
A07:20496884..20501063
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AA seq
852 aa
AA seq
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MVEGKGFLVSSVTELHRKEKQKKKGKSGGFESLNLGPNVYNAIKKKGYKVPTPIQRKTMP
LILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFAKE
LGKFTDLRVTLLVGGDSMQDQFEELTKSPDVIIATPGRLMHLLEEVDDMSLRTVEYVVFD
EADSLFGMGFAEQLHQILAKLGENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKI
SPDLKLSFLTLRPEEKYAALIYLVREHISSNEQTIIFVSTKHHVEFVNSLFKLENIVPSV
CYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVG
RAARAGRTGSAISFVTPEDIPYLLDLHLFLSKPIRPAPTEDEVLKNMEEVMNRTSEAIES
GVTVYGRFPQKTIDLIFNKIQEMIDSSAELDSLERTSRKAFRLYTTTKPAPSKESIRRAK
ALPREGLHPMFKSIIEGGELEAMAFFQKIKNFRPKQTILEAEGENAKARNVKGLQWVDVM
KRKREVHEEIINKRHEQSQKTSSNNHLEMEDDEPITTSIEDKIAGSKVSGKKRTAQQTFK
DEEFYISSIPVNHHSEAGLSVRGNEGFGSNRLDAAVLDLVADDGQGMKQQKTNYHWDKKS
KKFIKLNNGDRVTASGKIKTESGAKVRANKAGAIYKKWKDSTHKKAFSREDGDGDDTPSM
SGRGGRRGKRWSASVPNAHVRSEIKDLEQVRKERQEKANKMSYLHSKRGGGRGGARGGRG
GGRGSGRDFDGGSGRDFAGRSSRGGRGGGSSRGGRGGGFGGGRGGGSGGGRGGSSRGGKR
GGGGGGKRGRGR
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaggaaaaggtttcctggtgagctcggtcactgagcttcaccgcaaagagaag
cagaagaagaaaggcaaatctggaggattcgagtctctaaacctcggtcccaatgtctac
aacgcaatcaagaagaaagggtacaaagttcccacgcctatccagcggaagacgatgcct
ttgatcctctccggcgtcgacgtcgtcgccatggcgagaacgggttccggaaaaaccgca
gcttttctcatccctatgcttgagaagctcaaacagcatgttcctcagggtggtgttaga
gcgcttattttgtcgcctactcgtgacttggctgagcagactctcaagttcgctaaggag
ctcgggaagtttacagatcttcgagttaccttactagtcggtggtgatagcatgcaagat
cagttcgaagagctaacaaagagccccgacgtgatcatcgcaacccccgggagactcatg
catctcctagaagaggtagacgacatgtcactaagaacagtcgagtacgtcgtcttcgac
gaagcagacagtctcttcggcatgggtttcgccgagcagctccaccagatcctagccaag
ctaggcgaaaacagacagactctcctcttcagcgccaccttaccaagcgcgctcgcagag
ttcgcaaaggccggtctgcgcgagcctcagctagttcggttagacgtggagaacaagata
agccccgacttgaagctctcgtttctaaccttaagacccgaagagaagtacgctgcgttg
atatacttggtgagagagcatataagctctaacgaacagacgatcatatttgtttcaaca
aagcaccacgtggagtttgtgaactcgctgtttaagctcgagaacatcgttccctctgtg
tgctacggagacatggaccaagacgcgcggaagatccacgtgtcgaggttcagagcgagg
aagactatgttgctgatcgtcacagatatcgctgctagaggtattgacataccgttgctt
gataatgttatcaactgggacttccctcctaggcctaagatctttgtccatagagttggg
agagccgctagagctggccgtaccggctctgcgatatccttcgtcacgcctgaggatata
ccgtatctgttggatcttcatctgttcctgtccaaacccatcaggcccgcgcctaccgag
gacgaggtgctgaagaacatggaggaagtgatgaacaggaccagcgaggcgattgagagt
ggtgtcactgtgtacggtcgtttcccgcagaagacgattgatcttatctttaacaagatc
caggagatgattgattcctctgcggagttggattctcttgagagaacatccagaaaggct
tttcgtttgtatacgacgacaaaaccagctccatcaaaagagtccattaggagagcaaag
gccttacctagagaagggttgcatccaatgtttaaaagtataattgaaggtggtgagtta
gaggcaatggcgttttttcagaagattaaaaacttcagacccaagcagaccatacttgaa
gcagaaggtgaaaatgccaaagctagaaatgtgaagggtttgcaatgggttgatgtgatg
aagaggaaaagggaagttcatgaggagatcattaataagagacatgagcagagtcagaag
acttcttccaataatcatttagaaatggaagatgatgaacctattaccacttctattgag
gacaagatagctggaagcaaagtaagcggtaagaaaagaacggcgcaacaaactttcaag
gacgaagagttctatatcagctccatacctgttaaccaccactcagaggcaggactatct
gtgaggggtaacgaagggtttggatcaaatagattggacgctgctgtgctagatctagtg
gcagatgatggccagggaatgaagcagcagaaaactaattatcactgggacaagaaaagt
aagaagttcatcaagttgaacaatggagatcgtgtaacagccagtggcaagataaagaca
gagagtggagccaaggtgagggcaaacaaagcaggtgcaatatacaagaaatggaaagat
agcacgcacaagaaagcgttcagccgagaggatggtgatggagacgacacaccaagcatg
tcaggtagaggtgggcgacgcgggaagagatggtcagcatcagtgcctaacgcacatgtg
cgttcagagatcaaagatctggagcaggtgcgcaaggagaggcaggagaaagctaacaaa
atgtcttatctgcatagcaagagaggtggtggcagaggaggggccaggggaggtcgtggt
ggaggaaggggaagcgggagagactttgatggtggaagcgggagggactttgccggtaga
agcagtagagggggaagaggtggcggaagcagtagaggaggaagaggtggtggatttggc
ggcggaagaggtggtgggtctggcggtggccgcggtggtagtagcagaggtggtaaaaga
ggaggtggtggtggagggaaacgtgggagagggagatag
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