Brassica rapa (field mustard): 103831054
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Entry
103831054 CDS
T03449
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103831054
03036 Chromosome and associated proteins [BR:
brp03036
]
103831054
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
103831054
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
103831054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Tex_N
Spt6_S1
HTH_44
HHH_9
HHH_3
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
103831054
NCBI-ProteinID:
XP_009105149
UniProt:
M4CIT0
LinkDB
All DBs
Position
A07:complement(22953964..22960950)
Genome browser
AA seq
1594 aa
AA seq
DB search
MSRNVVSDEEDDHELEDEDGEPVHADPVGNADNDDDDEEDEEGEDEYENDGFIVGDEEEE
EEEEDDEEEEKKNSDEERQKKKKKRRKMDEDLDEDDYLLLQDNDVKFQKRKFKRLKKAQR
EREGGQGGSSDDEFDRSGGAGRSAEDKIKDNLFDDVDDLPDDVGDEEELAVEEDVVGSED
EMADFIVDEDGNGQPRRGDNRKKRYRQGSDMSAIHDANEIFGDVGELLSLRKKGLASSER
MERRLEDEFEPTILSEKYMTGKDDEIRQVDIPERMQISEDSTGSPPVDELSIEEESNWIY
GQLTSMLKDPDGLYVLGGQGFSVSKDDIAKFLELHHVQKLEIPFIAMYRKEQCRSLLDSS
DISDLNTEKKPEAKWHKVLWMIQDLDKKWLLLRKRKTALHGYYTKRFEEESRRVYDENRL
NLNQYLFESVMKSLQVAETEREVDDVDSKFNLHFPAGEVGVDEGQYKRPKRKSQYSVCSK
AGLWEVANKFGYSAEQLGLALSLEKLVDELEDAKETPEEMAMNFMCAMFENSQAVLKGAR
HMAAVEISCEPSVKKYVRGIYLENAVVSTSPTAEGNGIIDSYHQFTGVKWLREKPLSKFE
GAQWLLIQKAEEEKLLQVTFKLPENYMNRLVSDCYEHYLSVGVSKYAQLWNEQRKLILED
ALHAFILPSMEKEARNLLTSRAKSRLLSEYGEALWNKVSAGPYQKKEMDISSDEEAAPRV
MACCWGPGKPPNTFVMLDSSGEVLDVLYAGSLTLRSQNVNDQQRKKNDQDRVLKFMMDHQ
PHVVALGAVNLACTRLKDDIYEVIFQMVEDKPRDVGQMDDLTIVYVDESLPRLYENSRIS
GEQLPQQSGIVKRAVALGRYLQNPLVMAATLCGPGREILSWKLHPLEGFLQVDEKYGMVE
QVMVDITNQVGIDINLAASHEWLFSPLQFISGLGPRKAASLQRSLVRAGSIFVRKDLIMH
GLGKKVFVNAAGFLRIRRSGLAASSSQFIDLLDDTRIHPESYGLAQELAKDIYDQDVRGD
SNDDEDAIEMAIEHVRDRPGSLRKVVLEEYLASKNRENKKETYSNIMRELSCGFQDWRIP
FKDPTPDEEFYMNSGETEDTIAEGRIVQATVRRLQSGRAICVLDSGLTGMLTKEDFADDG
RDIVELSDRLKEGEILTCKIKSIQKVRYQVFLICKESEMRNNRHQRNQNLDPYYHEDRNS
LQIEKEKARKEKELVKKHFKSRMIVHPRFQNITADQATEYLSDKEFGESIVRPSSRGLNY
LTLTLKIYDGVYAHKEIVEGGKESKDITSLQRIGKTLTIGEDTFEDLDEVMDRYVDPLVS
HLKTMLNYRKFRKGTKSEVDELLRIEKSENPARIVYCFGISHEHPGTFILSYIRSTNPHH
EYVGLYPKGFKFRKRMFESIDKLVAYFQRHIDDPLQETVPSIRSVAAMVPMRSPADRGSS
GGGSWGGNSDRSSGPRPGRGGEYRNGGGRGDGHPSGAPRPYGGRGRGRGRRDNNSEREDG
NGDWGNNNTGSGDGGWGSSGGGGWGSESGGKKSDGAGGWGSESGGGGGGGWGNESGGKKS
SEDGGWGKEASGKKSGEDGGWGNSGGGGGGGGGW
NT seq
4785 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggaacgttgtctctgacgaagaagacgatcacgagctcgaggatgaggacgga
gagccagttcatgcagatcctgtcggtaatgctgacaacgatgatgatgatgaggaggac
gaagagggtgaggatgaatatgagaacgatgggttcatagtgggtgatgaagaagaggaa
gaagaggaggaagatgacgaagaagaagaaaagaaaaatagcgatgaggagaggcagaaa
aagaagaagaaacgaaggaaaatggacgaagatcttgatgaagatgactatctgcttctc
caagataacgatgtcaaattccaaaagaggaagtttaagaggttgaagaaagctcaaagg
gaaagggaaggtggccaggggggatcatctgatgatgagtttgacaggagtggtggagct
ggaagaagcgccgaggacaagatcaaagacaatctctttgatgatgttgatgatttgcct
gatgatgtaggcgatgaggaggaattagcggtggaagaagatgtagttggtagcgaggat
gaaatggctgatttcatcgtagatgaagatgggaatggtcagcctaggaggggagacaat
aggaaaaagagatataggcaaggatcagatatgagtgctatacatgacgctaacgaaata
tttggtgatgtcggagagttattgtcacttcgtaaaaagggtttggcatctagtgaaagg
atggaaagaaggctcgaagatgagtttgagccaactattctttctgaaaagtacatgaca
gggaaagatgatgaaatccgccaagttgatattcccgagaggatgcagatatctgaagat
agcactggaagccctcctgttgatgaacttagcattgaggaagagagcaattggatatat
ggacagcttacttcgatgctaaaagatcctgatggactttatgttttaggaggacaaggt
ttctcggtcagcaaggatgatattgcaaaatttttggagcttcatcatgtgcagaaacta
gagataccatttatagccatgtaccgaaaagagcaatgccggagcttgttggactcttct
gatattagtgacctcaatacagagaagaaacctgaggccaaatggcataaggtcctctgg
atgattcaggacttggataagaagtggctccttcttcgaaaaaggaaaacggcgttgcat
ggttactatacaaagcgtttcgaagaagagtctaggagggtctatgatgaaaataggctc
aacctaaatcagtatctttttgaatcagtcatgaaatctctccaagttgcagaaacagag
agagaagttgatgatgtagattccaagttcaacttgcattttcctgccggtgaagttggt
gttgatgaagggcagtacaagaggccgaagcgaaaatcacaatatagcgtctgcagcaaa
gcagggctctgggaggttgcaaacaaatttgggtatagcgcggagcagttgggacttgca
ttgtccctagaaaaactggttgatgagcttgaggatgcaaaggaaacaccagaggagatg
gcaatgaactttatgtgcgcaatgtttgaaaattctcaagctgttcttaagggtgcacgg
catatggctgctgttgagataagttgcgagccatcagtcaaaaagtatgtccgtggcatt
tatctggagaatgcagtagtctcaacgagtccaacagcagaggggaatggaataatagac
tcttaccatcagtttactggggttaaatggttacgtgaaaagccattgagcaagtttgag
ggtgcgcagtggcttctcattcaaaaggcagaagaggagaaacttcttcaagtaaccttc
aagctgcctgagaattacatgaacaggctggttagcgactgctatgaacactatctaagt
gtcggtgttagtaagtatgctcaactctggaatgagcaaagaaaattgatactggaggat
gcacttcatgcttttattttgccatcaatggagaaagaagcaagaaacttgctaaccagc
agagcgaagagtaggttgctttcagagtatggagaggctttgtggaataaggtgtctgca
gggccatatcagaagaaagaaatggacattagctcagacgaggaagctgcaccgagggtc
atggcatgttgttggggccctggaaagccgccaaatacatttgtgatgctggattcatcg
ggagaggtgcttgatgtgctttatgctggatctctcacactgcgatcccaaaatgtcaac
gaccaacaacgtaaaaagaatgaccaggatcgtgttttaaagtttatgatggaccaccaa
ccgcatgttgtggctctaggagctgtcaatttggcttgtactcgtctgaaggatgatatt
tatgaagtcattttccagatggtggaagataaacctagagatgttgggcagatggatgat
ttaaccattgtttatgtagacgaatcacttcctaggctatacgaaaactctcgaatctca
ggcgaacagctacctcaacagtctgggatcgtgaaacgtgcagttgctctaggacgctat
ctccagaatcctctagtaatggcagcgacgttatgtggtccaggccgggaaatactgtct
tggaagcttcacccgttggagggttttcttcaggtcgacgagaagtatgggatggttgaa
caggtcatggttgacataacaaaccaggttgggatcgacattaatttggcagctagccat
gagtggcttttctctcctctacagttcatttctggacttggacctaggaaagctgcatcc
ttgcagaggtcgctcgtaagagctggttcaatatttgttcgcaaggaccttataatgcat
gggcttggtaaaaaagttttcgtaaacgcagccggtttcttgcgcatcaggaggagtggg
ctggctgctagcagcagtcagtttatcgatttactggatgataccagaatacatccggaa
tcgtatggtcttgcacaagaacttgcgaaagatatttatgatcaggatgttagaggtgac
tccaacgatgatgaggatgcgatagagatggcaatagagcatgtgagagatcgaccaggc
tctttgagaaaagttgtcctcgaggagtatcttgcaagcaagaaccgggagaataagaaa
gagacttacagtaatatcatgagagagttgagctgtggcttccaggattggcggatacct
tttaaagatccaactccagacgaagagttttatatgaactctggtgagactgaagacacc
atagctgaggggagaattgtccaggccactgttaggagactgcagagcggaagagccata
tgtgtattggattctggactgactgggatgcttacgaaggaggatttcgcagatgatggg
agagatatcgtggagttgtcagaccggctgaaagaaggcgagatccttacgtgcaagatc
aaatcgattcagaaggtgaggtatcaagtgttccttatatgcaaggagagtgagatgagg
aacaacaggcaccagcggaaccagaatctggatccgtattaccacgaggatagaaacagt
ctccagattgaaaaagagaaggctcggaaagaaaaggagctggtgaagaagcatttcaag
tctcggatgattgtccatccacgtttccagaacatcactgctgatcaagccaccgagtat
ttatctgacaaagaatttggagagagcattgttcgtccaagctctcgaggactcaattac
ttgacattgacgctcaagatttacgatggagtctacgctcacaaggagatagttgaaggt
ggaaaagaaagcaaggacatcacgagccttcagcgtattgggaagacgctgacaattgga
gaagacaccttcgaggatttagatgaggtcatggatcggtatgttgaccctctggtctct
cacctcaagacgatgctcaactacaggaagttccgtaaggggacaaaatcagaagttgat
gagcttctcaggatcgagaagagtgaaaatccagcaaggatagtttactgttttgggatt
tcacacgaacaccctggtacctttatactgtcctacataaggagcaccaatccgcatcac
gagtacgtgggtctataccccaagggattcaagttcaggaaaaggatgtttgagagcatc
gacaagcttgtggcctacttccagaggcatattgatgacccgttgcaggaaacagttcca
tcgatcaggtctgttgctgcaatggtgcccatgagaagcccagcagaccgtggctcttct
ggaggaggtagctggggtggtaactcagatcgctcttccggaccaagaccagggagaggc
ggtgagtacagaaacggtggtggacgtggtgatgggcatccaagtggagcgccaaggcct
tatggtggtcgtggtaggggcagaggaaggagggataataacagtgagagagaagatgga
aatggagattggggaaataacaataccggaagtggggatggaggttggggaagtagtggt
ggtggtggttggggaagcgagtccggcggtaaaaagagtgacggtgcaggcggatggggt
agtgagtctggaggtggtggtggtgggggttggggaaatgagtctggcggtaaaaagagc
agcgaggatggtggttggggaaaggaggccagtggaaaaaagagcggtgaagacggcggt
tggggaaatagcggtggtggtggaggtggcggtggcggatggtga
DBGET
integrated database retrieval system
