Brassica rapa (field mustard): 103834867
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Entry
103834867 CDS
T03449
Name
(RefSeq) serine/arginine-rich splicing factor RS40 isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103834867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103834867
Spliceosome [BR:
brp03041
]
Common components
Common spliceosomal components
SR proteins
103834867
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Nup35_RRM_2
RNA_bind
DbpA
Nup35_RRM
DUF2129
Motif
Other DBs
NCBI-GeneID:
103834867
NCBI-ProteinID:
XP_009109205
UniProt:
M4D1V9
LinkDB
All DBs
Position
A08:complement(15383932..15386591)
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AA seq
348 aa
AA seq
DB search
MKPVFCGNFEYDAREGDLERLFRKYGRVERVDMKAGFAFVYMEDERDAEDAIRALDRIEF
GRKGRRLRVEWTKGERGGDRRSGGGSRRSSSMRPSKTLFVINFDADNTRTRDLERHFEPY
GKIVNVRIRRNFAFVQYEEQEDATRALDATNNSKLMDKVISVEYAMKDDDARGNGHSPER
RRDRSPERRRRSPSPYKRERGSPDYGRGGSPVAAYKRERTSPDYGRRRSPSPYKRTRRSS
PEYGRDRHRGNESPRRRERGASPRYSRSPDNKRERVSPDRSPLKKESSQNGDGEVDSPNE
RRERSRSSPENGQVESPGSIGRRDSDGGYDGADSPMQKSRSRSPPAEE
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgaagccagtcttctgtgggaactttgagtatgatgcgcgtgagggtgatcttgaacgg
ctattcaggaaatacggaagggttgagagggtggatatgaaagctgggtttgctttcgtg
tacatggaagatgagagggatgctgaagatgctatccgagcccttgaccgcattgaattt
gggcgcaagggacgtagactccgtgttgagtggactaagggtgagcgtggaggtgataga
agatctggtggtggttcaaggagatcctcatccatgaggccttccaagactctgtttgtg
atcaacttcgatgcggataatactaggaccagggatctagagagacactttgaaccttat
ggcaaaattgtgaacgttaggatcaggaggaactttgcatttgtccaatacgaggagcaa
gaggatgccactagagcattggatgctaccaataacagtaagctgatggataaggtgatc
tcggtggagtatgccatgaaagatgatgatgcaagagggaacggacacagtcctgaaaga
cgccgtgataggtcacctgaaaggagaagacgatcaccttctccttacaagagagaaaga
gggagccctgactatggccgaggtggtagtcccgttgctgcatacaaaagggaaaggacc
agtcctgattacggcagaagacgtagcccaagtccttacaagagaacaaggcgtagcagt
cccgagtatggtcgcgaccgccacagaggcaatgagagtcctcggaggagggagaggggt
gcaagccccaggtacagccgcagtcctgacaacaagagagagagggtgagccctgatcgc
agcccgttaaagaaggagagctcgcagaatggagatggtgaggttgatagcccaaatgaa
aggagggagaggtcgaggtctagccctgagaatggccaagttgaaagccctggctctatt
gggaggagggacagtgatggtggctatgatggtgctgatagcccaatgcagaagagccgg
tctcgttcgcctccagctgaagagtga
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