Brassica rapa (field mustard): 103840247
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Entry
103840247 CDS
T03449
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1A
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04120
Ubiquitin mediated proteolysis
brp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103840247
04120 Ubiquitin mediated proteolysis
103840247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
brp04121
]
103840247
Enzymes [BR:
brp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103840247
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103840247
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_5
zf-RING_16
zf-RING_11
LRRFIP
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
103840247
NCBI-ProteinID:
XP_033128806
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All DBs
Position
A01:complement(24692630..24696037)
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AA seq
501 aa
AA seq
DB search
MIRLRTYACLSFIATLSIIHHAFTTRGQFYPAAVYLSTSKISLMLLLNMCLVLMLALWHL
VKLLFLGSLREAEVERLNEQAWRELMEILFAITIFRQDFSSGFLPLVVTLLLIKALHWLA
QKRVEFIETTPNVSKLAHVRIVSFMAFLLVVDGLFMYSSVRHLVRSRQASVSLFFSFEYM
ILATTTVAIFVKYVFFVTDMIMDGQWEKKPVYTFYLELIRDLLHLSMYICFFFVIFMNYG
VPLHLLRELYETFRNFQIRVSDYLRYRKITSNMNDRFPDATPEELTASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQQTCPTCRALVVPPENGTSTTAAGQRGLHQGSQQGTSS
SGAQGSETRSSAGGSNDSLSRHHARLQAAASAAAMYGKSMVYPSANTIAWSQPGLEKAST
EAHHYPSSSSSDPTSQLPGENYRAYANIPEAKLENMKNSLETQLEVLRNRLHFLEKRKVE
TTGEADNKGKTVVDASVDGAE
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgatccgattaagaacctacgcatgcctcagcttcatcgccaccctctccataatccac
cacgccttcaccacgcggggccaattctaccccgccgccgtctacctctccacctccaag
atcagcctgatgctcctcctcaacatgtgcctcgtcctcatgctcgccctctggcacctc
gtcaagctcctcttcctcggctccctccgcgaagccgaggtcgagaggctgaacgagcag
gcctggagagagctcatggagatcctcttcgccatcaccatcttccgtcaagacttctcc
agcggtttccttcccttggtcgttacgctcttgctgatcaaggccttgcattggctcgct
cagaagagagttgagtttatcgagacgactcctaacgtctctaagctcgcgcacgttcgt
attgtttcgttcatggcgtttcttcttgttgtggatggtttgtttatgtatagctctgtg
aggcatttggttaggtcgaggcaggcttcggtttctctcttcttctctttcgagtatatg
attttggcgacgacgactgtggcgatttttgtgaagtatgtgttctttgttactgatatg
attatggatggtcagtgggagaagaagcctgtttatactttctatcttgagcttatccgt
gacctgcttcatctctctatgtacatttgcttcttctttgtcattttcatgaactatggt
gtgcctttgcacttgttgagggagctctatgaaaccttcaggaacttccagattcgtgtt
tctgattaccttcgttatcgtaaaatcacttccaatatgaacgacaggttccctgatgcc
actcctgaagaacttactgcaagtgatgccacatgtattatatgccgtgaagaaatgaca
actgcgaagaagctgatatgcgggcatctgtttcatgtgcattgtcttcgatcctggttg
gaacgacagcagacatgtcctacttgcagggcactcgttgtacctcctgagaatggcaca
tctactacagctgcaggccaacgaggattacaccaaggttctcaacaaggtacttcaagc
tcaggtgcccagggctctgaaacacgttcttctgctggtggttccaatgatagtttgagc
aggcaccacgccaggcttcaagcagctgcttctgcagccgccatgtacgggaagtcaatg
gtttatccatctgcaaacacaatagcgtggtctcagccgggtctagagaaagcttcaaca
gaagcacatcattatccttcatcatcatcctctgacccaacatctcagcttcctggtgaa
aactatcgtgcctatgcaaatatcccagaggctaagctggaaaatatgaagaactcttta
gagacccagctcgaggttttgcgaaacagacttcattttctggagaagaggaaagtggaa
accacaggggaagcagataacaaaggaaagacggttgttgatgcttctgtagatggagca
gagtga
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