Brassica rapa (field mustard): 103841729
Help
Entry
103841729 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 11
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103841729
03041 Spliceosome [BR:
brp03041
]
103841729
03036 Chromosome and associated proteins [BR:
brp03036
]
103841729
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103841729
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103841729
mRNA cycle factors
Common to processing body (P body) and stress granule
103841729
Spliceosome [BR:
brp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103841729
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103841729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
103841729
NCBI-ProteinID:
XP_009116530
UniProt:
M4CT57
LinkDB
All DBs
Position
A09:36618764..36622080
Genome browser
AA seq
611 aa
AA seq
DB search
MSTSWADVADSDNAASRAKPAYVPPHLRNRQSEPAAPLPGNDRGGGYGGQPSRWAPGGGG
GGGGYRADAGRTGYAYGGRGSTGGGGGWNNRGGGGGGGWDREVNPFGDDVDLEPAFTEQE
NTGINFDAYEDIPIETSGGDVPPPVNTFAEIDLGEALNLNIRRCKYVRPTPVQRHAIPIL
LAQRDLMACAQTGSGKTAAFCFPIISGILRDQNPQRPRGSRTVYPLAVILSPTRELASQI
HDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIK
FLALDEADRMLDMGFEPQIRKIVEEMDMPPRGMRQTMLFSATFPREIQRLAADFLANYIF
LAVGRVGSSTDLIAQRVEFVHESDKKSHLMDLLHAQRDTGNHDKQSLTLVFVETKRGADS
LENWLCMNDFPATTIHGDRTQQEREVALKSFKSGRTPILVATDVAARGLDIPHVAHVVNF
DLPNDIDDYVHRIGRTGRAGKSGVATAFFNEKNAQLARQLAELMQEANQEVPEWLTRYAS
RASFGGGKKRSGGRFGGRDFRREGSYGGRGGGSGGGGNDYYGGGGGGGYGGGGYGGAPSG
GYGGQVTSAWD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatcatgggcagacgtggctgattcagacaacgccgcttccagggcgaagcct
gcttacgttccccctcatttaaggaacagacaatccgagcctgctgctcctttgccagga
aatgaccgtggtggaggatacggtggtcaaccctctcgctgggctcctggcggtggtggc
ggtggaggtggttacagggctgatgcagggcgtaccggttacgcttacggtggacgagga
agtactggtggtggtggtggttggaacaacagaggtggaggaggaggaggaggatgggac
cgtgaagtgaatccctttggagatgatgttgatctagagcctgcctttacagagcaggag
aacaccggcattaactttgacgcctatgaggatatccccattgagaccagcggcggtgac
gtgcctcctcctgtcaacacgtttgcggagattgatcttggggaggcgttgaatctcaac
atcaggaggtgcaagtacgtgaggccgacgccagtgcagcgtcacgcgattcccatactg
cttgctcagagggatttgatggcgtgtgctcagacggggtctgggaagaccgctgctttt
tgctttccgatcattagcgggatcctgagagatcagaatccgcagaggcctcgtgggtca
aggacggtttatcctcttgctgttatcctctcgccaacaagggagctggcaagccagata
catgatgaagccaaaaagttctcataccaaactggtgtgaaggttgttgttgcttatgga
ggaacacctattaaccagcagctaagggaactggagagaggagttgacatccttgtggca
actcctggccggttgaatgatttgctagagagagctagagtctcgatgcagatgattaag
tttttagctctcgatgaggcggacaggatgctggacatgggttttgaaccacaaattaga
aagattgttgaagagatggacatgcctccacgtgggatgagacaaacaatgctgtttagt
gctacgtttcctagggagattcagagactcgctgctgattttctggcaaactatatattt
ttggctgtgggaagggtgggttcaagcactgacttgattgcccaaagggttgaattcgtc
cacgagtctgacaagaagagtcatctcatggatctgctacacgcccagagagacactggc
aaccatgacaagcaatcattgacattggtttttgtggagacgaagagaggagccgactca
ttggagaactggttgtgcatgaatgattttccagcaaccaccattcacggtgacagaaca
caacaggaaagagaagtggcactgaagtcattcaaaagtgggaggacacccattttggtc
gcaacagacgtggcagcacgtggacttgacattccacacgtggctcatgtggttaacttc
gatctaccaaatgacattgatgactatgttcaccgcatcgggagaacaggacgtgcaggc
aaatccggcgtagctacagctttctttaatgagaagaatgcgcagctggctaggcagctc
gctgagctgatgcaagaagctaaccaagaggtgcctgagtggctcacgcgatacgcttca
cgtgcttcatttggcgggggtaagaaacggtctggtggaaggtttggtggccgtgacttc
agaagggaaggctcttacggcggtaggggaggaggcagtggtggcggtggaaatgactac
tatggtggaggaggaggaggaggctatggtggcggtggatatggtggtgcaccaagtggt
ggctatggtggacaagtgaccagtgcgtgggattag
DBGET
integrated database retrieval system