Brassica rapa (field mustard): 103841732
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Entry
103841732 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103841732
03041 Spliceosome [BR:
brp03041
]
103841732
03036 Chromosome and associated proteins [BR:
brp03036
]
103841732
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103841732
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103841732
mRNA cycle factors
Common to processing body (P body) and stress granule
103841732
Spliceosome [BR:
brp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103841732
Chromosome and associated proteins [BR:
brp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103841732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
103841732
NCBI-ProteinID:
XP_009116534
UniProt:
M4CT60
LinkDB
All DBs
Position
A09:36628739..36632549
Genome browser
AA seq
650 aa
AA seq
DB search
MSSSWADVSEPERPPSSGWGGGGYGDSRPSRTNYVPPHLRSRPPSSDFAAPSHGNHRGGY
GGRGGRGSGYVGRGGGGGGGWDRRDTETNPFGNDGNAEPPGVNEQENNTGINFEAYEDIP
IETSGDNVPPPVSTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG
SGKTAAFCFPIISGIMKEGEHVERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTG
VKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVKYLALDEADRMLD
MGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDL
IVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLRINGFPA
TTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR
IGRTGRAGNSGLATAFFNDNNTSMAKPLAELMQEANQEVPDWLSRYASRASFGGGKNKRS
GGRFGGRDFRRESGGYGGGPGGGYGGGLGGGYGGGLGGGYGGGYGGGYGGGPGGGYGAMQ
GGYGTVPGGGYGTVPGGYVPYGRGGGAYYGGGYGTVPNQGYGPGVASAWD
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatcatgggctgatgtttctgaaccggagagaccaccatcatctggttggggt
ggaggtggttacggtgactctcgtccgtccagaaccaactacgttcctcctcatcttagg
agccgtccgccatcttcagactttgctgctccttcacatggtaaccaccgtgggggatac
ggtggtagaggaggtcgtggctcaggctatgtaggtagaggaggaggtggtggtggtggt
tgggaccgtagggacactgaaacgaacccgtttggtaacgatggcaatgcagagccgccg
ggtgttaacgagcaggagaacaacacaggcatcaactttgaagcgtatgaagatattccc
atcgagacgagtggggataatgtgccacctcctgttagtacatttgcggagattgatctc
ggagaggctctgaatctcaatattcagaggtgcaagtacgtgaagccgacccctgtgcag
cgtaacgcgattcctatattagctgctgggagggatttgatggcttgtgctcagacaggg
tctgggaagacggctgcgttttgttttccgattattagtgggattatgaaggagggggag
catgttgagagaccgcgtggagttcggggagtctatccacttgctgttattctctcacca
actagggagttggcttgccagatacatgatgaagctagaaagttctcgtatcaaactggt
gtgaaagttgtggttgcttatggaggaacacctgtcaaccaacagataagggagcttgaa
aggggtgttgatattcttgttgcaacacctgggagattaaacgatttgcttgagagaggt
agagtctcactacagatggtgaaatacttggcacttgatgaggcggacaggatgctggac
atgggttttgaaccacaaatcaggaagattgttcagcagatggacatgcctcctcctggt
gtccggcagacaatgctgttcagtgctacatttcctagggagatacagagacttgcctct
gattttctttcaaattacatatttctggctgtcgggagagtggggtcaagtacggatttg
attgtccaaagagtagagtttgtccacgattctgacaaaagaagccatctcatggacctt
cttcatgctcagagggagaatggtaaccaaggaaagcaagctttgactctagtatttgtg
gagacgaagaagggagctgactctttggagaattggttgcgcattaatggattcccagca
actaccatccacggtgataggtcacaacaggaaagagaagtggcgctgagatcattcaag
actgggcggacacctattcttgttgcaaccgacgtggctgcacgtgggcttgacattcca
cacgttgctcatgttgttaactttgatctaccaaacgacatcgacgactatgtccaccgt
attggacgaacaggacgtgcaggcaattcagggttggcaactgctttcttcaacgacaac
aacacatcaatggccaagccactcgccgagctgatgcaagaagcaaaccaggaggtccct
gactggctgagtcggtacgcatctcgtgcttcatttggaggtggtaagaacaagcggtct
ggtgggcggtttggaggccgtgacttcaggagagaatctggtggctatggaggcggtccc
ggtggtggctatggaggcggtcttggtggtggctatggaggcggtcttggtggtggctat
ggaggcggttatggtggaggctatggaggcggtcccggtggtggctatggcgcaatgcaa
ggtgggtatggaactgtaccaggtggtggatacgggacggttcctggtggttatgtacct
tacggtagaggaggtggtgcttactatggtggaggatatggaactgttcctaaccaaggg
tatggtcctggagtggctagtgcttgggactaa
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