Brassica rapa (field mustard): 103859161
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Entry
103859161 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103859161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103859161
03009 Ribosome biogenesis [BR:
brp03009
]
103859161
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103859161
Spliceosome [BR:
brp03041
]
Complex A
U1 snRNP components
U1 related factors
103859161
Complex B
103859161
Ribosome biogenesis [BR:
brp03009
]
Eukaryotic type
Pre-60S particles
Helicases
103859161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
103859161
NCBI-ProteinID:
XP_009134902
UniProt:
M4CAH1
LinkDB
All DBs
Position
A03:complement(16228664..16233172)
Genome browser
AA seq
1052 aa
AA seq
DB search
MATAEAAPASAGPRYAPEDPTLPKPWKGLIDGSSGVLYYWNPETNVTQYERPSPPLPAGA
PPKLAQIPVPSAGQQGHQAQLELGKPVGHVPQQHGLQQQPQQFPSQHGRPQMMQQQQHPG
QQMPQQSGQQFSQPQGQSMAPQPHGHPSQQTYQPTPQQQQQQQAMQNQHSQMPQQLSHQY
PHSQQQYMGYRPYMQQQGTQSSHQTPPQMGPQGQQFPSQQEYNSMPPKREGEEFHRGEKT
GFSQPHLQNSEASPSQNTAFEAKASSQRPNATQQYSGPQGNFQHPAAVTQFQQPGANLAH
QQLGPRPPHHMDQMLHQKSHASPFRSNNTYENNLQARPGNDSYGNTRMEGPMRGAQPRHP
AAMPEDIRIGGGPPAHADPAMGQTGHGPYGHAGPAFPTVGRPHFVTTPDGPHLSPVDSYR
KQHEITVTGENIPAPFITFESSGLPPELLRELLSAGFPSPTPIQAQTWPIALQNRDIVAI
AKTGSGKTLGYLIPAFTLLRHCRNDPRNGPTVLILAPTRELATQIQNEALRFGRSSRISC
TCLYGGAPKGPQLQELERGADIVVATPGRLNDILEMRKIDFQQVSLLVLDEADRMLDMGF
EPQIRKIVNEIPPRRQTLMYTATWPNEVRKIANDLLVNPVQVNIGSVDELAANKAITQYV
EVVPQMEKERRLEQILRSQERGSKVIIFCATKRLCDHLSRSVGRNFGAVVIHGDKSQGER
DWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGV
AFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMRGGGGGGPGFNQDRRGMVNRFDSG
RGGSRWDSAGEFGGRGGGFGGRSGGFGMRDDSFGRGRGFPGPDGGRMNVGRGGFGRFGNN
NMDGRGFGRGGGGGGRGFSRGGGRFDNRRGRSRSRSPDLVRPRRSPSYSRSRSRSYSRSR
SRSWSRSRSRSPRRSGHKRSRSYSRSPSPVYERRDRRPRVSGFDIKPPAESVVNPDTVGT
AASETVVPAPLSERQGNGVVESEVEAALVDKP
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggctacggcagaagcagctccagcttctgctggtccacgatacgctccagaggatccc
actcttcccaaaccatggaagggacttatcgatggaagcagcggcgttttgtattactgg
aatcctgaaacgaacgttactcaatacgaaagaccttctccacctttgccagctggtgct
cctccgaagctagctcagattcctgtaccttccgcaggacaacaaggacatcaagctcag
cttgagctaggaaagcccgttggtcatgtgcctcagcaacatggtttacaacaacagcct
cagcagttcccatctcaacatggaaggccccaaatgatgcagcagcagcagcatccggga
cagcagatgcctcaacaatcaggtcaacagttttcacaaccacagggccaatctatggcg
ccgcagccacatgggcatccttctcaacagacgtatcagccaacaccacagcagcagcag
cagcagcaagcaatgcagaaccagcattcacagatgcctcagcagctgagccatcagtat
ccacattcacaacaacagtacatgggttatcgtccttacatgcaacaacaagggactcaa
agttcacatcagacgccacctcagatgggtccccagggtcagcagtttccgagccagcaa
gagtacaactcaatgcctccaaagagggagggggaggagttccataggggtgagaaaact
gggttttcacaaccccatttacaaaattctgaagcttccccatctcaaaataccgccttt
gaggctaaggcatcatcacaaagaccaaatgcaactcagcaatacagtggacctcaagga
aactttcaacaccctgctgcagtcacacagtttcaacagccaggggctaatctggctcac
cagcagcttggacctaggcctccacatcacatggaccaaatgttgcaccagaagtctcat
gcttcccctttccgatctaataatacctatgagaataatctacaagctagacctggaaat
gactcctacggtaacacaagaatggaagggccgatgagaggtgcacagccacgccatcct
gcagcaatgcctgaggatataaggataggtggcggtccacctgcacatgctgatccggcc
atggggcagacagggcatggaccatacggacacgctggtccagcttttccaaccgtagga
aggcctcattttgtaacaactcctgatggtccccatctttcgcctgttgatagttaccga
aaacagcatgaaatcacagtaactggtgagaacattccagcaccattcatcacgtttgaa
tctagtggtctcccacctgaattacttagagagttgctttctgctggatttccatcacca
acaccgatccaggctcaaacatggccaattgctctgcagaacagggatatagttgcaatt
gcaaaaactggttctggtaaaacattgggatacttgatccctgccttcactcttcttagg
cactgtcgtaatgacccccgcaatggccccacggttttgatcttagctcctactcgggag
ctagctacacagatacaaaatgaagcccttaggtttggccggtcttccagaatatcatgc
acttgcttgtatggtggagctccaaagggtcctcaattgcaagaattggaacgaggagct
gatattgtggtggcaactcctgggcgcctaaatgacatactggagatgaggaagattgat
ttccaacaagtttccctccttgtgcttgacgaagcagatcgaatgcttgacatgggtttt
gaaccccaaatccgtaagattgtgaatgaaatacctccgcggagacagactcttatgtac
actgcgacttggccaaatgaagttaggaaaattgcaaacgatcttctcgtgaaccctgtc
caagttaacataggcagcgtagatgagttggctgcaaacaaggcgataacgcagtatgtt
gaagttgtcccacaaatggagaaggagaggcgtttggagcaaatccttaggtcgcaagaa
cgaggttcaaaagttataatattctgtgccacaaagaggctttgtgaccatctttcacgc
agcgttggacgtaattttggtgctgttgtaatccatggagacaaatctcaaggcgagaga
gattgggttcttaaccagttccgcagcgggaagtcgtgtgtgttgatagctactgacgtt
gctgcccgggggctcgatataaaagacataagagttgtgatcaactacgattttccaact
ggtgttgaagactatgtccatcgtatcgggagaactggtcgagctggtgcaactggagtt
gcattcactttctttacagagcaagattggaaatacgcacctgatttgatcaaagtcctg
gaaggagcaaaccagcaagtaccgcctcaagtgagggacattgcaatgcgtggtggtggt
ggtggtggtccgggttttaatcaggaccgaagaggcatggtaaaccgttttgactctggc
cgtggtggtagccgttgggattctgcaggtgagtttggtgggcgtggcggtgggtttgga
ggccgaagtggcggatttggaatgagagatgattcatttggacgtggtcggggttttcct
ggtcctgatggtggtcgtatgaatgtgggtagaggtggatttggtcggtttggtaataat
aatatggatggtcgaggctttggtcgtggtggtggtggtggtggtagaggctttagtcgt
ggtggtggacggtttgataacagaagaggtagaagccgtagcagaagtcctgatttggtt
aggccacgtcgtagcccgagctatagcaggagccgcagccggagctatagccgtagtcgt
agcaggagctggtcacgctcaaggagtcgtagccctaggcgtagtggtcataaacggagc
agaagctatagccgtagtcctagtccagtgtatgaaagaagggataggcgaccgcgtgtt
tctgggtttgatattaaaccaccagctgagtctgtcgtgaatccagacactgtaggaact
gctgcttctgaaaccgtggtccctgctccattgtctgaaagacaagggaatggtgttgtc
gagtctgaggtagaagcagctttagttgataagccctaa
DBGET
integrated database retrieval system