Brassica rapa (field mustard): 103861568
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Entry
103861568 CDS
T03449
Name
(RefSeq) DNA mismatch repair protein MSH3 isoform X2
KO
K08736
DNA mismatch repair protein MSH3
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
103861568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brp03400
]
103861568
DNA repair and recombination proteins [BR:
brp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
103861568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
103861568
NCBI-ProteinID:
XP_009137534
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All DBs
Position
A03:complement(27229395..27234926)
Genome browser
AA seq
1098 aa
AA seq
DB search
MGKQKQQVISRFFAPKPKPSPPPNQESSTPPPKISATVSFSPSKRKLLSDHLAAASPKKP
KPSQNPTPKPDPNLHRRFLQRFLEPPPEEESLPVTTSIKYTPLEQQVVELKRKHPDVILM
VEVGYRYRFFGEDAEIAARVLGIYAHMDHSFMTASVPTFRLNVHVRRLVNAGYKVGVVKQ
TETAAIKSHGANRAGPFFRGLSGLYTKATLEAAEDISGGCVGEEGFGGQSNFLVCVVDER
VDRESNKGCGLEASFDVRVGVVGVEISTGEVVHGEFNDNFMRSGLEAVVLSLSPAELLLG
QPLSQQTEKFLLGYAGPTSNVRVERAALDRFRNGSAVDEIVSIYEDLSARNIEDDKENKV
EAAEEKISRLTVHTIMNMPHLTVKALALTLRHLKQFGFERILFEGASIRSLSSTTEMTLS
ANTLQQLEVIRNNSDGSESGSLFHNMNQTLTVYGSRLLRHWVTHPLCDRNLISARLDAVS
EIVACMGSPSSSQVSDELGEESSERKIIPPEFYHVLSSVLTALSRSPDIQRGITRIFHRT
AKATEFIAVIEAILLAGKQLQRLGIKQDCETRSMQSATVRSSLLRKLISVVSSPAVVDNA
AKLLSALNKEGAARGDLLDILITSSNQFPELAEARQALLAVREKLDSLIVSYRKKLANRN
LEFLEVSGITHLIEVPVDAKVPINWVKVNSTKKTIRYHPPEIVSGLDELALATEHLAIVN
RASWDSFLKSFARYYTDFEAAVQALAALDCLHSLATLSRNKNYICPLFVDDSEPVEINIQ
SGRHPVLETILQDNFVPNDTSLHAEREYCQIITGPNMGGKSCYIRQVALISIMAQVGSFV
PASFAKLHVLDGVFTRMGATDSIQHGRSTFLEDLSEASHIIRTCSSRSLVIIDELGRGTS
THDGVAIAYATLQHLLVEKRCLVLFVTHYPEIAELSNSFPVSAGTYHVSYLTSQKDNGGS
DHNDVTYLYKLVRGLCNRSFGFKVAQLAQIPPSCIHRAITMAANLEAEVRARERNTVSSI
KHLMESPGEPKAHDEPPESRTEESMSVLGDLFADLRCALSEDDPSKSFKLLKDAWKIAED
LVARQKYLCINKNIPRER
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagcagaaacagcaggtgatttctcgattcttcgctcccaaacccaaaccctca
ccgccgccgaatcaggaatcgtcaacaccgccgccgaagatttccgccaccgtctccttc
tccccttccaagcgaaaacttctctccgatcatctcgccgccgcgtcacccaagaagccc
aaaccatctcaaaaccccacacccaaacccgaccccaatctacaccgaagattcctccag
agattcctagaacctccaccggaggaagaatctctccccgtaaccacctcgattaagtac
acgccgttggaacagcaggtggtggagctgaagaggaagcacccggatgtgattctgatg
gtggaagttggttacaggtacagattcttcggagaagacgcggagatagcagcgcgtgtg
ttgggtatctacgctcatatggatcacagcttcatgacggcgagcgtaccgacgtttcgg
ctcaatgtccacgtgaggaggctggtgaatgcagggtacaaggttggtgtggtgaagcag
actgaaactgcggctattaagtcccacggtgcgaaccgggccggtccgtttttccgtggc
ttatcgggtttgtatactaaagcgacgcttgaggcggctgaggatataagtggcgggtgt
gttggtgaagaaggttttggtggtcagagtaatttcttggtttgtgtagtggatgagaga
gttgatagggagagtaataaaggttgtggtttggaagcgagttttgatgttagagttggt
gttgttggtgttgagatttcgactggtgaagttgttcatggagagtttaatgataatttc
atgaggagtgggttagaggctgtggttttgagcttatctccagctgagttgttgcttggc
cagcctctttcacagcaaactgagaagtttctgttgggatatgctggacctacttcaaac
gttcgagtggaacgtgccgcactggatcgtttccgcaatggtagtgcagtagatgagatt
gtttcaatatatgaagatctcagtgcaagaaacatagaagatgataaagaaaacaaggtg
gaggctgctgaagagaaaatatctcgcttgacagttcatacaattatgaacatgccacat
ctgactgttaaagcccttgccctgacactgcgccatctcaaacagtttggatttgaaagg
atccttttcgagggagcttcaattcgctctttatcaagcaccacagagatgactctctca
gccaatacactgcaacagttggaggttataagaaataattcagatggatcggagtctggc
tctttattccataatatgaaccagactcttacggtatatggttccaggcttcttagacac
tgggtgactcatcctctttgcgatagaaatttgatatcggctcgccttgatgctgtttct
gagattgttgcatgcatgggatctcctagttcttcccaggtcagcgatgagttaggtgaa
gaaagttctgagagaaaaattataccacctgagttttatcatgtgctctcctcagtcttg
acagctttgtctagatcacctgatattcaacgtggaataacaagaatttttcatcgaact
gctaaagccacagagttcattgcagttatcgaagctattttacttgcggggaagcaactt
caacgccttggcataaagcaagattgtgaaacgaggagtatgcaatccgcaactgtgcgg
tcttctcttttgagaaaattgatttctgttgtttcgtcacctgctgtggttgacaatgcc
gcgaaacttctctctgccctcaacaaggaaggggctgctcgaggagacttgctcgacata
ctaatcacttccagcaaccaatttcctgagcttgctgaagctcgccaagcacttctagct
gtcagggaaaagctagactccttgatagtttcatatcgaaagaagcttgcaaatcgaaat
ttggaatttcttgaagtgtctgggatcacgcatttaatagaggtgcctgttgatgccaag
gttcctatcaattgggtgaaagttaatagcaccaaaaagactattcgatatcacccccca
gaaatagtatctggactggacgagctagctctagcaacagaacatcttgctatagtgaac
cgagcttcatgggatagttttctcaaaagttttgctagatactatactgattttgaggct
gccgttcaagctcttgctgcgctggactgtttgcactcccttgcaactctatctagaaat
aagaactatatttgtcctttgtttgttgatgacagtgaaccagttgagataaacatacag
tctggtcgtcatcctgttttggagactatattacaagataacttcgtcccaaatgacaca
agcttgcacgcagaacgggaatattgccagattatcactggacctaacatgggaggaaag
agctgttatatccgtcaagttgctctaatttccataatggctcaggttggttcctttgta
ccagcttcattcgccaagctgcacgttcttgatggtgttttcactcggatgggtgctaca
gacagtatccagcatggtcgaagtacctttctagaggacttaagtgaagcctcgcacata
atcagaacctgctcttcacgttcgcttgttataatagatgagcttggaagaggcactagc
acacatgacggtgtagccattgcctatgcgacactacaacatctcttagtagaaaagaga
tgtctagttctttttgtgacgcattaccctgaaatagctgagcttagtaacagtttcccg
gtttctgctggtacataccatgtctcgtatctgacatcacagaaggataatggcgggtct
gatcataatgatgtgacctacctatataaacttgtgcgtggcctttgcaacaggagcttt
ggttttaaggttgctcagcttgcccagatacctccatcatgtatacatcgagccattacc
atggctgcaaatttggaagctgaggtacgtgcaagagagagaaatacagttagtagcata
aagcatctcatggagtcaccgggggaaccaaaagcacatgatgaacccccagaatctcgc
accgaagaatctatgtctgttttaggtgatttgtttgcagacctgagatgtgctctctct
gaagacgacccttcaaaatcatttaagttgttaaaagatgcttggaagattgcagaagat
ttagtagcaaggcaaaaatatttatgtattaacaagaacatcccaagggagagatga
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