Brassica rapa (field mustard): 103865826
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Entry
103865826 CDS
T03449
Name
(RefSeq) pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103865826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103865826
Spliceosome [BR:
brp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
103865826
Complex C
U4/U6.U5 tri-SnRNP related factors
103865826
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
BUD22
Motif
Other DBs
NCBI-GeneID:
103865826
NCBI-ProteinID:
XP_009141927
UniProt:
A0A397ZP49
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All DBs
Position
A04:complement(20067452..20069905)
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AA seq
345 aa
AA seq
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MANRTDPLAKNIRGTNPQNLVETIVRKKIHDHTFWKEQCFGLTAETLVDKAMELDHVGGT
FGGNRKPTPFLCLVLKMLQIQPEKEIVVEFIKNDDYKYVRVLGAFYLRLTGSDADVYRYL
EPLYNDYRKVRQKLADGRFSLTHVDEVIEELLTKDYSCDIAMPRLKKRCTLEQNGVLEPR
KSVLEDDFEEEEEKEENEGMADGSEDEKDHHRRSPERERERDRRRDSHRHRDRDYDRDYD
MDRDYDRDRGRGRDRDRERDHYRGRDRERERDREGDRRDRARRRSRSRSRDRKRRDSDDD
RDREEPKKKKEKKEKKMREDGTDHPDPEIAEANKLRASLGLKPLR
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaccgcacggaccccttagccaagaacataagaggcacgaacccgcagaacctc
gtggagacgatcgtgcggaagaagatccacgaccacactttctggaaagagcagtgcttc
ggtctcacggcggagacgctcgtcgacaaagctatggagcttgaccacgtcggtggaacc
ttcggcggcaaccgaaagcccactcctttcctctgccttgtgctgaagatgctgcagatc
cagcctgagaaagagatcgtcgttgagttcatcaagaacgatgattacaaatacgttcgt
gtacttggtgcgttttatctgcgtctcactgggtctgacgctgatgtgtatcgttacctt
gagcctttgtacaatgactataggaaagtgaggcagaagctagctgatgggaggttttcg
ttgacacatgtggatgaagtcattgaggagcttctaaccaaggattattcttgtgatatt
gcaatgccacgcctgaagaaaaggtgtacgctggagcagaatggtgtgttggagccgagg
aagagtgttttggaggatgattttgaggaggaagaagaaaaggaggagaatgaagggatg
gctgatggatctgaagatgagaaggatcatcaccgtaggagtcctgaaagagaaagagag
agggacaggagacgtgacagtcatagacacagggatcgtgattatgatagagactatgac
atggaccgagactatgacagggaccgtgggcgtggtagagaccgggatagggagagagat
cactatagaggccgtgatagggagagggaacgagacagagaaggggacagaagagacagg
gcaaggcgtagaagtagaagcagaagtagggatcgtaagaggcgcgatagtgatgatgac
cgggacagggaggaaccaaagaaaaagaaagagaagaaggagaagaagatgagggaagat
gggacagatcatccggatcctgaaattgctgaagctaataaactgagagcatctctggga
ctgaaacccttaagataa
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