Brassica rapa (field mustard): 103866854
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Entry
103866854 CDS
T03449
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103866854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103866854
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
103866854
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
ATG17_like
Motif
Other DBs
NCBI-GeneID:
103866854
NCBI-ProteinID:
XP_009143093
UniProt:
M4CKZ6
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Position
A05:2466680..2470298
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AA seq
784 aa
AA seq
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MSGFSFGQSNTGGGSLFGSSSAASSSSASSTSSPLAFSFNQSTGFGFGATSSAAPASSSA
APSFGFGATASAPATSTTLSFGFGANASAPAASTTPSFGFGATSSAPTASTTPSFGFGAT
SSAPASSTTPSFGFGATSSAPASSTTPSFGFGATASTVTAPASSTTPSFGFGATSSTVTA
PASSATPSFGFGAPASTGFGFGSSAASSSPSLFGSSTNAPAASPGSSPFGFVTSSASQPG
ASSSSATVSAPSPFGAPASGSAFSSSLFSAPSSAASSSSPLFATSSSVPASTASLFGAQS
SATASTPSMFGAAAPSSSAPSSTPSMFGSSSASGSSQSIFGAAAASPASGSSPSIFGAAA
SSASGSSPSIFGATGSTQAIFGSSSLSGAAAASSPSQFGFSTNNTSSTTTNPLASPFSAS
TGLSFSKSTGSSTPAISASASAPSQTTSSSSSFSFATPAISAPASTTSPALFSIATTTTT
TSSSSPAATSAPSSSAAASTTTFPSFGVGSSAANSTPATSSAPAFGFTTSTSAAATTAFA
VPQIASTTATTTQTSLVVASTSGTSTTVAAPVAGAPKLPSEITGKTVEEIIKEWNTELEE
RTGRFRKQANAIAEWDKRILQNRDVLLRLEIEVAKVVETQSSLERQLELIDTHQQEVDKA
LQSMEEEAERIYNDERKSLLDDEAASTRDAMYEQSELVERELEHMTEQIRSIIQSVNANQ
GGELEAVDGMNPLDVVVRILNNQLSSLMWIDEKAEEFSSRIQKIASQGSGADRELMMAPK
HWMS
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgtctgggttttcgtttggtcaatcgaatactggtggaggatctttattcggatcttcc
tccgccgcgagctcctcttctgcttcatccacctcgtctccgttagctttctcattcaat
caatccaccgggtttggatttggagccacctcatcggctgctcctgcttcctcctccgca
gctccatcgttcggattcggagccaccgcgtcggctcctgctacgtccacaactctatcg
ttcggatttggagctaacgcatcggctcctgctgcttccacaactccatcgttcggattt
ggagccacgtcatctgctcctactgcttccacgactccatcgttcggatttggagccacg
tcatcggctcctgcttcctccacgactccatcgtttggatttggagccacctcatcggct
cctgcttcctccacaactccatcgttcggatttggagccaccgcatctactgtaacggct
cctgcgtcctccacaactccatcgtttggatttggagccacctcatctaccgtaacggct
cctgcttcctccgcaactccatcgtttggattcggagcgcccgcatccaccggattcggg
ttcggatcctctgctgcgtcttcatctccctctctttttggatcttctaccaatgctcct
gcggcttctcctggctcgtctcccttcggattcgtaacttcgtcggcttctcagcctggc
gcttcttcttcttccgcgactgtttcggcaccatctcctttcggagctccagccagtggt
tcagcattctcctcatccttattctccgctccttcatctgccgccagctcgagttctcct
ctcttcgcaacatcctcatctgtacctgcctcaactgcttctctattcggcgcacaatct
tcagccaccgcctctacaccttcaatgttcggcgcggcggctccgtcctcgtcagcccct
agctccacaccttcaatgtttggatcgtcatcagcctctggctcctcacagtcaatcttt
ggcgcggcggcggcgtcaccagcctctggctcctcaccgtcaatctttggagcggctgcg
tcctcagcttctggctcctcaccttccatctttggagccaccggttcgactcaggccatc
ttcggatcgtcttccttgtcaggcgcagcagcagcttcttcaccatcccagtttggattt
tccaccaacaacacttcctccactacaaccaatcccttggcttctccgttctctgcttct
accggactctctttctcgaaaagcacaggaagttccacccctgctatctctgcttctgct
tccgctccttcacaaacgacttcctcatcttcctcattctcattcgctacacccgcaatc
tcagctcctgcatccaccacatccccagcactgttttcaatagcaaccaccaccaccacc
acgtcctcttcgagtcctgctgccactagtgcaccatcttcctcagctgcagcttccaca
acgactttcccttcttttggtgtgggctcatctgcagccaacagcactccggctacttcc
tctgctccagcatttggttttactacctccacttctgctgctgcaactactgcttttgct
gtaccccagatagcatcaactactgctactacaacgcagacatctcttgttgtggcttcg
actagtgggacaagcacaactgttgcagctccagtggctggtgctcccaagttaccatct
gaaataactggcaaaactgttgaggagattatcaaggagtggaacactgagctggaagaa
cgtacagggagattccggaaacaggcaaatgcaatagctgaatgggataagcggatcctg
cagaaccgtgatgttcttctgaggcttgagattgaagttgcaaaagtggttgaaacacag
tctagtttggaaagacagctggaattaattgacactcatcaacaagaggttgacaaagct
ttgcaaagcatggaggaagaggctgagcgtatatataatgacgagcgcaaatcgcttctt
gacgatgaagcagcatcaacaagagatgcaatgtatgaacagtctgagcttgtagaaaga
gaactggagcatatgactgaacagatcagatcgataatacaatccgtaaatgcaaaccag
ggtggagaactagaagcagttgatgggatgaatccattggatgtagtagtcaggatcttg
aacaatcaactcagttccttgatgtggattgatgagaaagcagaggagttctcatctcgg
attcaaaagatcgcatctcaaggctctggtgcagaccgtgaactgatgatggctccaaag
cactggatgtcttga
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