Brassica rapa (field mustard): 103871567
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Entry
103871567 CDS
T03449
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103871567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
brp04131
]
103871567
Membrane trafficking [BR:
brp04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
103871567
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Clathrin
WD40
zf-RING_2
ANAPC4_WD40
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
103871567
NCBI-ProteinID:
XP_009148079
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All DBs
Position
A06:3210828..3216546
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AA seq
972 aa
AA seq
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MASLPSENGVDGDDEREEEEEDEEEEEEEENGEEEGEEEPRLKYQRMGGNVPSLLSNDAA
SCIAVAARMIALGTHDGTVHILDFLGNQVKEFRAHTAPVNDLSFDSEGEYIGSCSDDGSV
VINSLFTDDEKLRFDYHRPMKAISLDPDYTKKQSKRFVAGGLAGHLYMNSKKWFGYKDQV
LHSGEGPIHSVKWRGSLIAWANDTGVKVYDTAKDQRVTFIERPRGSPRPEALLPHLVWQD
DTLLVIGWGTSVKIASIKSDQQKPAYGTYRQVQMSSLNQVDIVASFQTSYFISGIAPFGD
SLVILAYIPTEEDGVKEISSTTTLSRQGNAQRPEVRIVSWNSDELTMDALPVHGFEHYKA
KDYSLAHAPFPGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHINWLLQHGFHEKA
LAAVEAGEGRNELIDKVGAGYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAQLR
QLPVLVPYMPTDNPRLKDTVYEVALVALATNPSYHKELLSTVKSWPRSVYSALPVISAIE
PQLNTSSMTDALKEALAELYVIDGQHEKAFALYADLLKPEVFDFIEKYNLHEAIRGKVVQ
LMLLDCKRATALFIQNRDLIAPSEVVPQLLKAGKKCDSRYYLYLYLHALFQVSPDGGKDY
HDMQVELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDLLREQVFVLGRMGNAKQALAV
IINKLGDIEEAVEFVSMQHDDDLWEELIKQCLNKPEMVGLLLEHTVGNLDPLYIVNMVPN
GLEIPRLRDRLVKIVTDYRTETSLRHGCNDILKTDIVNLLVKCFNEARRGVCLSNEEDDS
RGKREDNNRSISQRMVVDKSLSIKMTEVKSKTRGDTRCCMCFDPVSIRGDTVVVFFCCHA
YHMTCLMDAAFSDSNIKTAAKGSSGYGYGYDNGVEEEDTEDEEEDDSNDGDRSGRSRLRC
ILCTTAAAASAR
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgctcccgtctgaaaacggcgttgacggagatgacgaaagggaggaggaggag
gaagatgaagaagaagaagaggaagaagaaaacggagaagaagagggcgaggaggagccg
cgtctcaagtaccagcgtatgggcggaaacgtaccttccttgctatccaacgacgctgct
tcctgcatcgccgttgccgcgaggatgatcgctctcggtactcacgacggaacggttcac
atcctcgatttcctcgggaatcaggtgaaagagtttcgcgcgcacacggccccggttaat
gatctaagctttgacagtgagggagagtatataggaagctgttcagacgatggctctgtt
gttataaacagccttttcactgatgatgagaagttgaggtttgattaccatcgccccatg
aaggctatttccttggatccggattacaccaagaagcagtcgaagagatttgtagctggt
ggtttggctggtcatttgtatatgaactcgaagaagtggtttggttataaagatcaggtg
ctgcattctggggaaggtccaatacattctgtgaaatggagaggaagtctcatcgcctgg
gctaatgatactggtgttaaagtttatgatacagccaaagatcagcgtgttacttttatt
gaaagaccccgaggaagcccccggcctgaggctttgcttccccacttggtttggcaggat
gacactcttcttgtgattggttggggaacatctgtcaaaattgcttcaattaaatcagac
cagcaaaaaccagcatatggaacatataggcaggttcagatgtctagtctaaaccaagtg
gacattgtggcttcgttccaaactagctatttcatttcagggattgctccctttggtgat
tctctagttattcttgcgtatatacccaccgaagaagatggtgtgaaagaaattagcagc
accactactctatctcgtcagggaaatgcccagaggcctgaagtacgcattgtatcatgg
aacagtgatgaacttacaatggatgctcttccggtacatggatttgagcattacaaggcg
aaagactattcccttgctcatgctccattcccaggtagtagctatgctggggggcagtgg
gcggctggtgatgaaccactgtactatatcgtgtctccaaaggatgttgtgattgcaaaa
cccagggatgctgaagatcacattaactggcttttgcaacatggattccacgagaaagca
ctagcagctgttgaggctggtgaaggacgaaacgaactaattgataaggtgggtgctggg
tatcttgatcatttgattgtggaaagaaaatatgctgaagcagcatctttgtgcccaaaa
ttgttacgaggatctgcttcagcctgggagaggtgggttttccattttgctcaattacgc
cagctgcctgtgcttgttccatacatgcctaccgataacccaaggctcaaggatactgtc
tacgaggttgctctagtggcactggcaacaaacccctcataccataaggagcttttgtcc
actgttaaatcttggccacgttcagtatattctgctttgcctgttatctcagcaatagag
cctcagctgaacacatcttcaatgaccgatgccctcaaagaggcgctggcagagctgtat
gttattgatggacagcacgagaaagccttcgccctatatgctgatcttctcaaaccagaa
gtgttcgacttcattgagaaatacaacttgcatgaggcgattcgtggaaaggttgtccag
ttaatgctgcttgattgcaagcgtgccactgccttgtttatccaaaacagggatttgatt
gctccatctgaagtggtcccacaacttttgaaagctggcaagaaatgtgattcaagatat
tacttgtacttatatctgcatgcgttatttcaagtcagtccagatggtgggaaggattat
catgatatgcaggtagaactatatgcggaatacgatactaaaatgctgcttccattccta
cgtagcagtcaacattacaagttagaaaaggcatatgaactttgtgtcaagaaagatcta
ctaagagagcaagtttttgtcctgggaaggatgggaaatgcaaaacaagctcttgctgtc
atcataaataaactgggggatatagaagaggctgtggaatttgtgtccatgcagcacgac
gatgatctctgggaagaactgataaaacaatgcctgaacaagcccgagatggtgggcttg
ctgttggagcacacggttggcaacctcgaccctctttatatagttaatatggtcccaaat
ggcttggaaatacctcgattaagggatcgattggtcaaaatcgtgacagattacagaacc
gagacatctctaagacacggttgtaatgacattctcaagacggacattgtgaatcttctg
gtcaagtgcttcaacgaggcgagacgtggggtctgcctaagcaacgaagaagacgattcc
cgtggaaagagagaagacaacaatcgatcgatctcacagagaatggtagtagataaatca
ttgagcataaagatgacagaggtgaagtcgaagacgcggggggacacacgttgttgcatg
tgcttcgacccggtatcgataagaggggacacggtggtggtcttcttttgctgtcatgct
taccacatgacgtgtctcatggatgctgccttcagcgacagcaacattaagacagcagct
aaaggttcttccgggtatggatacggctacgataacggtgtggaggaggaagatactgag
gatgaggaagaagatgatagtaatgatggagacaggtctgggaggtcgcggctacggtgc
atattatgtactactgccgctgctgcgtccgctcggtag
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