Propioniciclava sp. MC1595: J4N02_09430
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Entry
J4N02_09430 CDS
T07112
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brt
Propioniciclava sp. MC1595
Pathway
brt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J4N02_09430 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brt03400
]
J4N02_09430 (ligD)
Enzymes [BR:
brt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J4N02_09430 (ligD)
DNA repair and recombination proteins [BR:
brt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J4N02_09430 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QTE24803
LinkDB
All DBs
Position
1995312..1996223
Genome browser
AA seq
303 aa
AA seq
DB search
MSDVMTEVDGRTLKLSNLDKVLYPNGFTKGEVIAYYHAIAPVMLPHLAGRPVTRIRFPNG
TDAANFFEKNIPNGTPEWVHVHHVVGSSEDITYPIVDDTPTLVWLANLAALELHTHQWRA
DPDARQTTIDDDLPLDQLVIDLDPGQGVEMPLIATAALIISGELADAGLTPFVKTSGSKG
LQLYAPLEPTPAGTLVPWVRTFGEKLVELHPELFVTEIAKAARAGKILVDVNQNLPGRTT
VCAYSLRAKAEPTASTPLTWDEVEAATEGAPLTFTSANVLARVERHGDLFEPLLTGRRGR
LPD
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgtgatgaccgaggtggacgggcgcaccctcaagctgtccaacctcgacaag
gtgctctacccgaacgggttcaccaagggcgaggtcatcgcctactaccacgcgatcgcg
ccggtcatgctcccccacctggccggacgccccgtcacccggatccgcttccccaacggc
accgacgccgcgaacttcttcgagaagaacatccccaacgggacacccgagtgggtgcac
gtccaccatgtcgtcggcagcagcgaggacatcacctacccgatcgtcgacgacaccccc
acgctggtctggctggccaacctggccgccctcgagttgcacacccaccagtggcgcgcc
gaccccgacgcacggcagaccaccatcgacgacgacctccccctcgaccaactcgtcatc
gacctcgaccccggccagggcgtcgagatgccgctcatcgcgaccgccgcgctgatcatc
tcgggggaactcgccgacgcggggctgacccccttcgtgaagacctccggctccaagggg
ctccagctctacgcccccttggaaccgacccccgccggcaccctcgtcccgtgggtgcgc
accttcggggagaagctggtcgaactccaccccgagctgttcgtcaccgagatcgccaaa
gccgcccgcgcgggcaagatcctggtcgacgtcaaccagaacctcccgggtcgcacgacg
gtgtgcgcctactcgctgcgggccaaggccgagcccacggcgtccacaccgctcacctgg
gacgaggtcgaggccgccaccgagggtgccccactcaccttcacctccgccaacgtgctg
gcccgcgtcgagcggcacggcgacctgttcgagcccctcctgaccggacgccgcgggcgc
ctgcccgactga
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