Brachybacterium sp. P6-10-X1: BH708_17365
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Entry
BH708_17365 CDS
T04713
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brx
Brachybacterium sp. P6-10-X1
Pathway
brx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BH708_17365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brx03400
]
BH708_17365
Enzymes [BR:
brx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BH708_17365
DNA repair and recombination proteins [BR:
brx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BH708_17365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
APX34181
UniProt:
A0A1P8NIW1
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All DBs
Position
3935466..3938039
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AA seq
857 aa
AA seq
DB search
MATAEQKVEIDGHTLKLSNLEKVFYPSTGTTKGDVIDYYRRIAPVMIPQATRRPATRKRW
VDGVGTARKPGKVFFRKDLEDHAPDWVPRSDIEHEDGTSTYPLVDETAVLVWLAQLAALE
IHTPQWRFDDEGGSRNPDRLVLDLDPGDGADLADCARVAQWCREILADMGLTSYPVTSGS
KGVHLYAPLDGASTADEVDEVAHQLARALEQDHPDQVVSDMKKSLRAGKVLVDWSQNNGH
KTTVCPYSLRGRLRPTVAAPRTWEEIEDPDLAHLEVDEVLERVEDGQDPIAPLGGEPGGA
PWRSGASGRSGGSGSGSQDEDTPSAERAPSTEQARDRLEVYRSKRDPDRTPEPVPESGAG
AEAAQDALDAAVPMFVIQEHHASSLHWDVRLENDGVLVSWAVPKGPPLEVDVNRLAVRTE
DHPLEYGTFEGTIPRDEYGGGDVSIWDTGTVEIEKWREGEEVIAVCHGRENGGLGGVPRR
YAFLHTGGMGGTQKTAAAKEKAASNWLLHLMKDQPEAVGAESQAATSADTAMGEPITPML
ATLGSRDDIRDQDEWAFEMKWDGVRVIATIAGGAVRLTSRGGKDLTATFPELAGLGEAID
PDVLAAGETVLDGEIVALDGKDRPSFSRLQQRLGLTRDRDVERARKDVTAQVMLFDLLVR
GGDSLLRTPYRQRREALFETVSANEHVHLPHADHGDVDHAIDLSRHLQLEGVMAKKEQST
YRPGKRARTWIKIKNARHQEVVVIGWRRGKGERSGTLGSLLVAVPDEDGTLRYAGRVGTG
FSEQDLEDIARTLRSRSRKTPPVDDVPRADARDAEWVRADLVGEVQHTERTDDGRLRHPV
WRGWRRDKTADEVRWED
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgctgagcagaaggtcgagatcgacgggcacacgctgaagctctcgaacctc
gagaaggtcttctacccctccacgggcaccaccaagggcgatgtgatcgactactaccgc
cgcatcgccccggtgatgatcccccaggccacccggcgcccggcgacccggaagcgctgg
gtcgacggagtgggcacggcgaggaagcccgggaaggtgttcttccgcaaggatctcgag
gaccacgccccggactgggtgccgcggtcggacatcgagcacgaggacggcacctcgacg
taccccctggtcgacgagacggcggtgctggtctggctcgcccagctcgccgccctggag
atccataccccgcaatggcggttcgacgacgagggcgggagcaggaacccggaccgcttg
gtgctcgacctcgacccgggcgacggcgccgatctggcggactgcgcccgcgtcgcgcag
tggtgccgggagatcctcgcggacatgggtcttacgtcctacccggtgacgtccggctcg
aagggggtccacctgtacgccccgctggacggggccagcaccgccgacgaggtcgacgag
gtcgcccaccagctggcgcgcgccctcgagcaggatcatcccgaccaggtggtcagcgac
atgaagaagtcgctgcgcgccggcaaggtcctggtggactggtcgcagaacaacggtcac
aagaccaccgtgtgtccctactccctgcgcggccggctccgcccgaccgtcgccgccccc
cgcacctgggaggagatcgaagaccccgatctggcccatctcgaggtcgacgaggtgctg
gagagggtggaggacgggcaggacccgatcgctccgctcggaggggagccgggcggtgcg
ccatggcgctccggcgcctcgggccgctccggcggctcgggctccgggagccaggacgag
gacaccccgtcggcagagcgcgctccctcgaccgagcaggcccgcgaccggctcgaggtc
taccgctccaaacgtgatcccgacaggaccccggagccggttcccgagtcgggagccggc
gccgaggccgcgcaggacgccctcgatgccgcggtgccgatgttcgtcatccaggagcac
cacgcctcgtccctgcactgggatgtccgcctcgagaacgacggggtgctggtctcctgg
gcggttcccaagggaccgccgctcgaggtcgacgtgaaccgcctcgccgtccggaccgag
gaccatcctctcgagtacggcaccttcgagggcaccatcccccgcgacgagtacggcggc
ggcgacgtgagcatctgggacaccgggacggtcgagatcgagaagtggcgcgagggcgag
gaggtcatcgccgtctgccacggccgcgagaacggggggctgggcggggtgccgcgccgc
tacgccttcctccacaccggcggcatgggcgggacgcagaagaccgcggcggcgaaggag
aaggccgcctcgaactggctgctgcacctcatgaaggaccagcccgaggccgtgggcgcg
gagtcgcaagccgcgacctcggccgacaccgccatgggcgagccgatcacccccatgctc
gccaccctcggcagccgggacgacatccgcgaccaggatgaatgggccttcgagatgaag
tgggacggcgtgcgcgtgatcgccaccatcgcagggggcgccgtccgcctgaccagccgt
ggcggcaaggacctcaccgccaccttccccgagctcgccgggctgggcgaggcgatcgat
ccggacgtcctcgccgccggcgagacggtgctggacggggagatcgtggcgctggacggc
aaggaccggccctccttctcccgcctccagcagcgcctcgggctcacccgcgaccgggac
gtcgaacgcgcccggaaggacgtcacggcacaggtgatgctcttcgacctgctggtgcgc
ggcggcgactccctgctgcgcaccccgtaccgacagcgacgcgaggcgctgttcgagacc
gtgagcgccaacgagcacgtccacctgccgcatgccgatcatggcgatgtcgaccatgcg
atcgacctctcgcggcacctgcagctcgaaggggtgatggccaagaaggagcagagcacc
taccggcccgggaagcgcgcccgcacctggatcaagatcaagaacgcgcgccaccaggag
gtcgtcgtcatcggatggcgtcgcggcaaaggcgagcgctccggcaccctcggctccctg
ctggtggccgtgccggacgaggacgggacgctgcgctacgcgggtcgcgtcggcaccggc
ttcagcgagcaggacctcgaggacatcgcccgcacgctgcgctcccgatcccgcaagacc
ccgccggtggacgacgtcccccgcgcggacgcccgcgacgccgaatgggtccgcgccgat
ctcgtcggcgaggtccagcacaccgaacggaccgacgacggccgcctgcgccaccccgtc
tggcgcggctggcgtcgggacaagaccgccgacgaggtgcgctgggaggactga
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