Bacillus safensis: BSL056_09480
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Entry
BSL056_09480 CDS
T05386
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsaf
Bacillus safensis
Pathway
bsaf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BSL056_09480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsaf03400
]
BSL056_09480
Enzymes [BR:
bsaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BSL056_09480
DNA repair and recombination proteins [BR:
bsaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BSL056_09480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
APJ11171
LinkDB
All DBs
Position
complement(1850072..1851904)
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AA seq
610 aa
AA seq
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MKPMRLTPAHDIPAGGDWVYELKYDGFRAILVWEEDEIRLESRTGKRLNKQFPEVMDQCE
QLREQLSPFLPLTLDGELVFLVSEQQSEFAKVQQRGRLKNKEAIQRQAERFPCHFIAFDL
LSCKGKPLVDSPLMERKNQLQQLFQEAKLPSSVQLEHPSLLQVIHTDQDSEYMKNVMTTY
LAEGLVAKKKSSKWHDNTRSKEWLKMKNWRYVSVIVTRFDKENGYFQGSIYQDSALIEVV
QFKHGFSKEEEQTLRTLFQTKGQLTGGSLYEIPPSIVASIACISFDGSALREPRFSSFLL
DADPAACTFQQMLKQLYPLPAAIDVTHPEKPIVPALQLNKADYLLYLRQAAPYLLPFLSE
RRLTLIRYPHGTGDEFFYQKSTPDYAPDFVLTDEVDDISYTVCNDPRTLLWLGNQLAMEF
HIPFETRDTDRPTEIVFDLDPPSVNEFHLAIEAAKRIKALLDGLFLTAFIKTSGGKGLQV
YIPLKKNAFTYEETRQFTAFICQFLCEQAPDLFTLERLKKKRGNRLYLDYIQHDAGKTII
APYSPRGNELGLVATPLEWDELYHDELHPSLFTMPAVIERLKEKGDPFRRMRHLVNDDAF
RQVLHQLAHM
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctatgcgattaacacctgcacatgatatacctgccggtggagactgggtgtat
gaattaaaatatgatggctttcgggctattcttgtatgggaagaagacgagattcgttta
gaaagcaggaccggaaaacggctaaataagcaatttcctgaagtgatggatcaatgcgaa
caattaagagaacaattgtctccttttttaccgctgacacttgacggagaattggtcttt
ttagtaagtgaacagcaaagcgagtttgcgaaggttcagcaaagaggcaggctgaaaaac
aaagaagccatacaacgacaggctgaacgatttccgtgtcatttcattgcattcgatcta
ttaagctgcaaagggaaacctctcgttgattcaccgttgatggaaagaaaaaaccagctg
cagcaattattccaagaagcaaagctcccctcctcagttcagctagagcacccttccctg
ttgcaggtcattcatacagaccaagactctgaatacatgaaaaacgtgatgacgacgtat
ttagcagaaggactagtagcgaaaaaaaagtcgagtaaatggcacgacaatactcgttca
aaagaatggctgaaaatgaaaaactggcggtatgtttctgtcattgtcacccgttttgac
aaagaaaatggctattttcaaggttccatttatcaagattcggctctcatcgaggttgtc
caattcaagcatggtttttctaaagaagaagaacaaacgctgcgtacactatttcagaca
aaaggccagttaacaggaggatcattatacgaaatccctccttctatcgttgccagcatt
gcttgtatatcctttgatggatcggcgttaagagagccgcgtttttcttcctttttatta
gatgctgatccagcagcatgtacatttcagcaaatgctcaaacagctgtatccgctccct
gctgctatagacgtcacccaccctgaaaaaccgattgtcccggctcttcaactaaacaag
gcagattacttactttatttaagacaagcggctccctaccttttgccctttttaagtgaa
aggcgtcttactttaattcggtatccgcatggcactggagacgaattcttttatcaaaag
tcgacacctgattatgcgccggattttgttttaacagatgaagttgatgatatttcttat
acggtctgtaatgatcctcgtacgcttctttggcttggcaaccagctggcgatggaattt
catatcccttttgagacaagagatacggatcggccgacagaaatcgtctttgatctagac
ccgccatctgtaaatgagtttcatctagccatagaagcggctaaacgaatcaaagcgctt
ttagacgggctttttctcacagcctttattaaaacaagcggaggtaaagggcttcaagtc
tatattcctttaaagaaaaacgccttcacatacgaagaaacaagacaattcaccgcattt
atatgccaatttttatgtgagcaagcaccggatctttttactctggaacgccttaagaaa
aaacgcggcaatcgcttgtatttagactacattcagcacgatgctgggaaaacaatcatc
gctccatattctccaagaggaaatgagcttggacttgttgcgacaccgcttgaatgggac
gaactctatcatgatgagcttcatccttctctttttacgatgccggctgttatagagcgt
ttaaaggaaaagggcgatccgttccgccgcatgaggcaccttgtgaatgatgatgctttt
agacaagttttacatcagcttgcacacatgtga
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