Brevundimonas subvibrioides: Bresu_0521
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Entry
Bresu_0521 CDS
T01291
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsb
Brevundimonas subvibrioides
Pathway
bsb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bresu_0521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsb03400
]
Bresu_0521
Enzymes [BR:
bsb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bresu_0521
DNA repair and recombination proteins [BR:
bsb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bresu_0521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADK99835
UniProt:
D9QKL0
LinkDB
All DBs
Position
522648..525227
Genome browser
AA seq
859 aa
AA seq
DB search
MKGELKTYQAKRRFAETPEPKGTKATRKGAAPLRYLIQRHAATRLHYDFRIEFDGVLKSW
AVTKAPSRDTTVKRLAVEVEDHPLDYGSFEGTIPDGNYGAGTVQLWDTGTWSPRHPETLE
ADWAKGSIKMDLDGERLKGGWALVRLKSDRGKPSKWANWLLLKEKDAHAVPGEGDALAEI
DASITTGRSLAEIAAGKTPGTPTRPTGRKAAARPKAAPSGATLSKPPAFTPIQLCKVADH
PPSGAGWAHEIKFDGYRVQIATGGGKARLYTRSGLDWSQKFPEVVADAARWPDGVIDGEL
CALDPDHMPDFPALQAAISAGRTADLVFFAFDLLSEGTEDLREKPLSHRKARLSGHIDRM
SRAARDRIRYVDHFASTGQAVLESACRMDLEGVISKKLDAPYTAGRSSTWLKSKCRGGDE
VVIGGWSSENGTRFRSLLVGVREGEGLRYLGRVGTGYSQAVMKTLLPALKAAASDASPFA
GKGAPRGGRDIHWLKPVLVAEVTHGGYTESGSLRQAAFKGLRADKPAAEVTERPQTPTPT
GKAAPATDLHVPGEPAPLASARGKVVVAGVTISNPDKILWPARDGHPAITKAELARYYEA
AADRILPHVADRPTSIIRAPEGVGGETFFQRHAMPGSNPRLKLIDVHERKPYVAVVDVGG
LVAIGQSGGLELHPWGCAPGEPEIPDQVTFDLDPDEGLDFEDVISAARVVRKKLEALGLH
PFVKTTGGKGLHVVVPIKTDARSRVTWDQNKAFAKGVSEAIRAEAPDRFTTTLAKKARGG
KIFLDYLRNGRMATAVAPWSPRARPGAGIAFPLAWTQVKAGLDPTAFSLRTYPALLKKPD
PWKDFRVSAVSLKGALKKL
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgaagggcgagctgaagacctatcaggccaagcgccgcttcgccgagacccccgaaccg
aagggcaccaaggccacccgcaagggggccgcgcccctgcgctacctgatccagcggcac
gcggccacgcggctgcactacgacttccgcatcgaattcgacggggtgctgaagtcctgg
gcggtgaccaaggccccgtcgcgcgacacgaccgtcaagcgtctggcggtggaggtcgag
gaccacccgctggactacggatcgttcgagggcacgattcccgacggcaactatggcgcg
ggcacggtccagctgtgggacaccggcacctggtcgccccggcatcccgagaccctggag
gcggactgggccaaggggtcgatcaagatggacctggacggagagcggctgaagggcggc
tgggcgctcgtccggctcaagtcggatcgcggcaagccctcgaaatgggccaactggctg
ctgctcaaggagaaggacgcccatgccgtgccgggcgagggggacgcgctggccgaaatc
gatgcctcgatcaccacgggccgaagtctggcggagatcgccgcgggcaagacgccgggg
accccgacacggccgacgggacgcaaggctgccgccagaccgaaggcggcgccgtccggg
gcgaccctgtcgaagccgccggccttcacgccgatccagctgtgcaaggtcgccgaccac
ccgccgtccggagccggctgggcgcatgagatcaagttcgacggttaccgcgtgcagatc
gcgacgggcggcggcaaggcccggctctacacgcgcagcggcctcgactggtcgcagaag
ttccccgaggtcgtcgccgacgcggcccgctggcccgacggggtgatcgacggcgaactg
tgcgcgctggaccccgaccacatgccggacttccccgccctgcaggcggccatctcggcc
ggcaggaccgccgacctggtcttcttcgccttcgacctgctgtccgaggggaccgaggac
ctgcgcgagaagccgctgtcccaccgcaaggcccggctcagcggccatatcgaccggatg
tccagggcggcacgggaccggatccgctacgtcgaccacttcgcctcgaccggccaggcg
gtgctggaaagcgcctgccggatggacctggagggcgtgatctccaagaagctggacgcg
ccctacaccgcggggcggtcgtccacctggctcaagtccaaatgccggggcggggacgag
gtcgtcatcggcggctggtcgtcggagaacggcacccggttccggtccctgctggtcggg
gtgcgggagggtgaaggcctgcgctatctcggccgcgtcggcaccggctattcgcaggcc
gtgatgaagacgctgctgccggccctgaaggcggcggcgtcggacgccagtcccttcgcg
ggcaagggcgcgccgcgcggcgggcgcgacatccactggctgaagccggtcctcgtcgcc
gaggtgacccacggcggctataccgaatccggatcgttgcgacaggccgccttcaagggc
ctgcgggcggacaagccggccgccgaggtcaccgagcgcccgcagaccccgaccccgacc
ggcaaggccgcgcctgccaccgacctgcatgtgccgggcgaacccgcgccgctcgcctcg
gcccggggcaaggtggtggtcgccggggtgacgatctccaatcccgacaagatcctgtgg
ccggcccgggacggtcatccggccatcaccaaggcggagctggcgcgctactacgaggcc
gcagccgaccgcatcctgccccatgtcgccgatcgccccacctcgatcatccgcgcgccc
gaaggcgtgggcggcgagaccttcttccagcgccacgccatgccggggtcgaacccccgg
ctgaagctgatcgatgtgcatgaacgcaaaccctatgtcgccgtcgtcgacgtcggcggg
ctggtcgccatcggccagtcgggcgggctggagcttcacccctggggctgcgcgccgggc
gagccggaaatcccggaccaggtcaccttcgacctcgaccccgacgaggggctcgatttc
gaggacgtgatctcggcggccagggtcgtgcggaaaaagctggaggcgctgggccttcat
cccttcgtcaagacgaccggcggcaaggggctgcacgtcgtcgtgccgatcaaaaccgac
gcccggagccgcgtgacctgggatcagaacaaggccttcgccaagggcgtgtccgaggcc
atccgggccgaggcgccggaccggttcacaacgaccctggccaagaaggcgcggggcggg
aagatcttcctcgactatctgcgcaacggccggatggcgaccgccgtcgccccgtggtcg
ccgcgcgcccggcccggcgcgggcatcgccttccccctggcctggacccaggtgaaggcg
ggcctggaccccaccgccttcagcctgcgtacctatccggcgctgctgaagaagccggat
ccgtggaaggatttccgggtctcggccgtcagcctgaagggggcgttgaagaagctctag
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