Bipolaris sorokiniana: COCSADRAFT_243297
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Entry
COCSADRAFT_243297 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
COCSADRAFT_243297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsc03400
]
COCSADRAFT_243297
Enzymes [BR:
bsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
COCSADRAFT_243297
DNA repair and recombination proteins [BR:
bsc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
COCSADRAFT_243297
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
BRCT
Complex1_49kDa
Bac_globin
Motif
Other DBs
NCBI-GeneID:
19135050
NCBI-ProteinID:
XP_007703812
JGI:
Cocsa1_243297
UniProt:
M2RZI9
LinkDB
All DBs
Position
Unknown
AA seq
994 aa
AA seq
DB search
MAEDTPMLDADAVRENTLMYGHDDDLDEKYPMRPLNLHKTLPFHTLFTDLFNPLMDTQKK
KQPVGPRRKVGPHGRGSLTPHEAKRNIVERFIANWRKQVGNDFYPAMRLIIPEKDRDRAM
YGLKEKAIAKVLIKLTRIGKDSDDAKHMLNWKLPSQLQKASAWTAGDFAGRCYEILSSRQ
LKTEYSDMSIAEVNNALDKLSQVGTEEEQVKIFQRFYRRMNAEEMTWLIRMILRQMKIGA
TEKTLLDIWHPDAETLFNVSSNLRRVCWELFDHNIRLEGENTGLCLMQCFQPQLAQFQDK
VGSFQKMVNRFKGDSDEDTFWIEEKLDGERMQLHMVEDPDAPGGKSFGFWSRKAKDYTYL
YGKHFHGDAAGALTRFITDAFGKNVKNIILDGEMVTWDMETDHIVGFGTLKTAAISEKEN
KTNQETGQRPLFRVFDCVYLNDTLLTQYTLRDRRRALESAVKGVHRRLEVHPYIEARSHT
EIEPALRKVVAEASEGLVLKNPRSMYCLNQRNNDWMKVKPEYMSEFGESLDCIVVGGYFG
SGRRGGAHSSFLCALLTNKSAKPGDPKHEHCWSFFKVGGGFSSDDYAALRGRTQGKWHDW
DPRRPPPFIELGGHEQNRQHERPDQWIRPSDSVVLECKAASVESSDKFRFALTLRFPRFK
QLRTDKRWDQALSVQEFLEVKTKVEIEKSEKEKEFKIEQSRRKRARTSKKPLAVMGNDTT
TTPYAGPKSKIFDALSFYVMTEQMHPVKKSKADLEALIKANGGRLVQRDSTDKNLIIIAD
KRLIKVASLEKRATNNIVKPIWIQDCITQNEADTGALPYLLPFEPNRHMLYLHDDDQFEF
ESNVDENGDSYARDIADVEEMRKFLDGMAKPESPATFQRHDFLKQLEDHGKPLEQLKTHM
FHSVKAVFSYDGDNKEWSLRAQLAKNYFRFGDGLIADNEEEEEGVTHVIVPDEKSLSKRG
NPRISGLARIVGIGWVEKCWEEGTRLDEERFQWG
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagatacgccaatgctggatgccgacgccgtacgtgagaataccctcatgtat
ggccatgatgacgaccttgatgagaaatacccaatgcggccattgaatttacacaagaca
ctgccgtttcacacattattcaccgatcttttcaatccgctcatggacacgcaaaaaaag
aagcaaccggtcggccctcggcgcaaggttggaccgcacggccgcggcagcctaacgcct
catgaagccaagcggaacatcgtcgagcgctttattgcgaattggcggaagcaggtgggg
aatgacttctaccctgcaatgcgcctcattattcccgagaaagaccgagaccgggccatg
tacggcctaaaggagaaggcaatagcaaaggtcttgatcaagctcaccagaattggcaag
gattcagatgatgcaaaacacatgctcaactggaaattgcctagtcagctgcaaaaagca
tcagcttggactgctggtgactttgccggacggtgttatgagatcctgtcgtcacggcaa
ctcaagacagagtacagcgacatgagcattgcagaagtcaacaatgctctcgacaaacta
tcgcaagtcggtacagaagaagagcaagtcaaaattttccagagattttaccggaggatg
aatgcagaggaaatgacatggctgatccggatgattcttcgtcagatgaagattggtgca
actgagaagaccttgcttgatatttggcatccagatgcagaaacgctattcaatgtgtcg
tcgaatcttcggcgtgtttgttgggagctttttgatcacaacatacgtctcgagggcgag
aatactggcctttgtctcatgcaatgctttcaaccgcaactagctcaatttcaggacaaa
gtaggctcgttccagaagatggttaacaggttcaaaggagattcagatgaagatacattc
tggattgaggagaaactcgacggcgaacgcatgcaactacatatggtagaggatccagat
gcgccaggtgggaaatcgtttggcttctggtcgcgaaaggcgaaagactacacttatctc
tatggaaagcatttccacggcgacgcagctggagcactaacgcggttcataacagacgca
tttgggaagaacgtgaagaacattatcctcgacggcgaaatggttacctgggacatggaa
actgatcacattgtcggttttggtactctcaagacggcagccatatccgagaaggagaac
aaaacaaaccaagagactggccagcgaccgctgtttcgagtgtttgactgtgtgtacctg
aacgatacgttgctcacccagtatacgcttcgtgatcgccgtcgtgctctggaaagcgct
gtcaaaggtgtacatcgcagattagaagttcatccatacattgaggctcgttcacatact
gagatcgagccggcgctgcgaaaagtggttgctgaagcatccgagggcttggtgttgaag
aaccctcgctcgatgtattgcttgaaccaacgaaataacgattggatgaaggtgaagccg
gagtacatgtccgagtttggagagtctcttgactgcattgtcgttggagggtactttggc
tctggtcgtcgcggtggtgcccactcatctttcctctgtgcgctacttacgaacaagagc
gcaaagccaggagaccccaaacacgaacattgttggtcattcttcaaggttggtggtgga
ttcagctcggacgactacgctgctttacgaggacgaacgcaaggaaaatggcatgactgg
gatcctcggcgtccaccgccattcatcgaactaggtggccacgagcagaatcggcaacat
gagagaccggaccaatggattagaccaagcgattctgtcgtactggagtgcaaagccgcc
agtgtcgagagcagtgacaagttccgctttgcattgacactccgctttccacgctttaaa
cagctcaggacagacaaacgatgggatcaggcgctttccgtgcaggagttcctcgaagtc
aaaaccaaagtagagatcgagaaatctgagaaggaaaaggaattcaagatcgaacagtca
cggcgcaagagggcacgcacatcaaagaagccgctggcggtgatgggtaacgatacgacg
acgacaccttatgcaggcccaaagtctaaaatcttcgacgcactcagcttctatgtcatg
actgagcagatgcacccagtgaagaaatccaaagctgacctagaggcactcatcaaagcc
aacggtggtaggcttgtccaacgcgactctacagacaagaatctcatcatcattgccgac
aaacggctgatcaaagtcgcgtctctggaaaagcgagctacaaacaacatcgtcaagccg
atctggatccaagactgtattacgcaaaacgaagcagacactggcgcattgccctaccta
cttccttttgaaccgaacaggcacatgctttacctccacgatgacgatcaattcgaattt
gagagcaacgtagacgagaatggcgattcttacgcacgcgacattgcggacgtagaagag
atgaggaaatttctggatgggatggcgaaaccggaaagtccagctacgttccagcgacac
gactttttgaaacagctggaagatcatggcaagcctctggagcagctgaagacccatatg
tttcactctgtcaaggctgtattctcgtatgacggagataataaagaatggtctctgagg
gcgcagctggcgaagaactatttccgttttggagatgggctgattgctgataatgaggaa
gaggaagaaggggtcacgcacgtcattgtgccagacgagaaatctttgtcgaagagaggg
aatccgagaatctctggacttgctcgaatagttggtataggatgggtggaaaagtgctgg
gaagaaggcacaaggttggatgaagagagattccaatggggctag
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integrated database retrieval system
