Blastococcus saxobsidens: BLASA_3098
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Entry
BLASA_3098 CDS
T01752
Symbol
LigD
Name
(GenBank) DNA ligase D/DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsd
Blastococcus saxobsidens
Pathway
bsd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BLASA_3098 (LigD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsd03400
]
BLASA_3098 (LigD)
Enzymes [BR:
bsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BLASA_3098 (LigD)
DNA repair and recombination proteins [BR:
bsd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BLASA_3098 (LigD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
CCG03968
UniProt:
H6RPA9
LinkDB
All DBs
Position
complement(2966028..2966999)
Genome browser
AA seq
323 aa
AA seq
DB search
MVAPGPGEVPLPMLAVAGQLPSAGDAAWGYEFKWDGVRAVAAVRDGRLELRSRKGGDISV
RYPELAALPPGVDDPGTVVDGEIVVMDEAGRPDFGALQNRMHRTGPEVVRLAAARPVTYL
VFDLLAHGGRDLTGLPYAERRSLLDGLTPGGHRWVTTPWFRGGGERVQAASRENELEGVV
AKRLDSPYQPGARSPDWRKIKNVRAQSVVVGGWRPGAGRRTGTIGSLLFGVHDDAGRLVY
AGHVGTGFTDQALRDLQAVLSPRRTSPFAGALPREITRDAHWVEPELVGEVAFTGWTAEG
RLRHPSWRGLRADVDVADVVVEP
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
gtggtcgcccccggcccgggcgaggtcccgctgcccatgctggcggtcgcggggcagctc
ccgtcggccggggacgccgcctggggttacgagttcaagtgggacggcgtccgggcggtc
gccgctgtgcgggacggccggctggagctgcggtcccgcaagggcggtgacatctccgtg
cgctatcccgagctcgccgcgctgcccccgggggtggacgatccgggcacggtcgtcgac
ggcgagatcgtggtgatggacgaggcggggcggcccgacttcggcgcgctgcagaaccgc
atgcaccggacggggccggaggtcgtccggctcgccgcggcccgcccggtcacctacctc
gtcttcgacctgctcgcgcacggcggccgggacctcaccggcctgccctatgcggagcgg
cggtccctgctggacgggttgacgcccggcgggcaccgctgggtgaccactccgtggttc
cgcggcgggggcgagcgggtgcaggccgccagtcgggagaacgagctcgagggcgtcgtc
gccaagcggctcgactcgccctaccagcccggggcgcgcagccccgactggcgcaagatc
aagaacgtccgcgcgcagtcggtcgtcgtgggcgggtggcgccccggcgccgggcggcgg
acgggcacgatcggctcgctgctgttcggggtgcacgacgacgccggccgcctggtctac
gccgggcacgtgggcaccggcttcaccgaccaggcgctgcgcgacctgcaggcggtgctc
agtccccggcgcaccagtccgttcgccggcgcgctgccgcgggagatcacccgggacgcg
cactgggtggagccggagctggtcggcgaggtggccttcaccggctggacggcggagggg
cggctgcggcacccgtcgtggcgtggcctgcgggccgacgtcgacgtcgccgacgtggtg
gtggaaccgtga
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