Bacillus siamensis: CWD84_18510
Help
Entry
CWD84_18510 CDS
T06647
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bsia
Bacillus siamensis
Pathway
bsia03030
DNA replication
bsia03410
Base excision repair
bsia03420
Nucleotide excision repair
bsia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bsia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CWD84_18510 (ligA)
03410 Base excision repair
CWD84_18510 (ligA)
03420 Nucleotide excision repair
CWD84_18510 (ligA)
03430 Mismatch repair
CWD84_18510 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bsia03032
]
CWD84_18510 (ligA)
03400 DNA repair and recombination proteins [BR:
bsia03400
]
CWD84_18510 (ligA)
Enzymes [BR:
bsia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CWD84_18510 (ligA)
DNA replication proteins [BR:
bsia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CWD84_18510 (ligA)
DNA repair and recombination proteins [BR:
bsia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CWD84_18510 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CWD84_18510 (ligA)
MMR (mismatch excision repair)
DNA ligase
CWD84_18510 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CWD84_18510 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
zf-NADH-PPase
5_3_exonuc
zf-IS66
HHH_8
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
AUJ78659
UniProt:
A0A2K9KEQ6
LinkDB
All DBs
Position
complement(3606816..3608822)
Genome browser
AA seq
668 aa
AA seq
DB search
MDKETAKHRAEELRRTIDQYSYEYYTLDEPSVPDSEYDRLMQELMAIEEEHPELRTPDSP
TQRVGGAVLESFQKVQHGTPMLSLGNAFNDDDLRDFDRRVRQAVGDGVAYNVELKIDGLA
VSLRYEDGYFVRGATRGDGTTGEDITENLKTIRNIPLKMKRNLSIEVRGEAYMPKQSFEA
LNEERLKHEEEPFANPRNAAAGSLRQLDPKIAAKRNLDIFVYSIAELDEMGVETQSQGLD
FLDELGFKTNQERKKCATIDEVIEMIEELQAKRADLPYEIDGIVIKVDSLDQQEELGYTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVITPTAVLEPVKVAGTTVSRASLHNEDLI
KEKDIRILDKVVVKKAGDIIPEVVNVLVEQRTGEEKEFNMPTSCPECGSELVRIEGEVAL
RCINPECPAQIREGLIHFVSRNAMNIDGLGERVITQLFREHLVRNVADLYKLTKEQVIRL
ERMGEKSTDNLISSIQKSKENSLERLLFGLGIRFIGSKAAKTLAMHFESLENLKQATEEE
LLAVDEIGEKMADAVITYFRKEEMLELLNELEELGVNTLYKGPKKVKAEDSDSYFAGKTI
VLTGKLEELSRNEAKAQIEALGGKLTGSVSKKTDLVIAGEAAGSKLEKAQELNIEVWNEA
QLLGELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagaaacagcgaaacaccgggcagaagaattgcgccgcaccatcgatcagtac
agttacgaatactacaccctagatgaaccgagcgtgccggattccgagtacgacagactg
atgcaggagctgatggccatagaagaagagcacccggagctcagaacgcctgattcgccc
acacagcgggtcggaggagcggtgcttgagtcgtttcaaaaggtgcagcacggcacgccg
atgctcagtctcggcaacgcatttaacgatgacgatcttcgcgattttgaccgccgcgtc
cgtcaggctgtcggcgacggcgtcgcttacaatgtagagctgaaaatagacggtcttgct
gtttctctccgttatgaagacggctatttcgtcagaggcgcgacaagaggagacggaacg
acgggcgaagatattacggaaaacttaaaaacgatccgaaacattccgctgaaaatgaaa
cggaacctctccatagaagtgcgcggagaggcgtacatgccgaaacagtcattcgaagca
ctcaacgaagaacggctgaaacatgaagaagagccgtttgccaatccccggaatgcggct
gcgggctcactccgacagctcgatccgaaaattgcagcgaaacgaaatcttgacatcttc
gtctacagtatagcggagcttgacgaaatgggtgtggaaacacagagtcaaggcctggat
tttctggatgagctcggttttaaaacaaaccaggaacggaaaaaatgcgccacgatagat
gaagtgattgaaatgatcgaagagctgcaggcgaagcgggccgatctcccgtatgaaatt
gacggaatcgtcatcaaggtggattcgctcgatcagcaggaagagctcgggtatacggca
aaaagcccgcgctgggcgattgcttataaattcccggcagaagaagtcgtgacaaaactg
ctcgatatcgaactgaatgtcggaagaacgggcgtcattacgccgactgccgtcctggag
ccggtaaaagtcgcggggacgacggtctcaagagcatcccttcataacgaagatttaatt
aaagagaaggacatccgcattctcgataaagtggtcgtcaaaaaagcgggcgatatcatc
cctgaggtcgtcaatgtcttagttgaacagcggaccggagaagaaaaagaattcaatatg
ccgaccagctgccctgagtgcggaagcgaacttgtccgcattgaaggagaggtcgcgctg
cgctgtatcaacccggaatgcccggcgcaaatcagagaaggcctgattcattttgtctca
cgcaacgcgatgaatattgacggcctcggagaacgtgtcatcacacagcttttccgtgaa
catctcgtccgtaatgtcgctgatttatataagctgacaaaagaacaggtcatccggctt
gagcggatgggggaaaaatcaactgacaatctgatcagctccatccaaaagtcgaaagag
aattcgctggaacggctgctgttcggtctcggcatccgttttatcggctcaaaagcggcc
aaaacactggccatgcattttgaaagcctggaaaatctgaaacaagccacagaggaagag
ctgcttgcagtagacgaaatcggtgaaaagatggctgatgccgtcatcacctacttccga
aaagaagaaatgcttgagcttttgaatgaactggaagagctcggtgtgaacacactctat
aaaggcccgaaaaaagtaaaagcggaggacagcgactcttattttgccggaaaaaccatc
gtgttaaccggaaagcttgaagagctgtccagaaatgaagccaaagcgcagatcgaagcg
ctcggcggaaagctgacgggatctgtcagcaaaaaaacagacttggtgatcgccggagaa
gcggccggaagcaagctggaaaaagcgcaggaattaaacattgaagtatggaatgaagca
cagctattgggagagctaaagaaataa
DBGET
integrated database retrieval system
