Peribacillus simplex: UP17_14025
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Entry
UP17_14025 CDS
T04304
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsj
Peribacillus simplex
Pathway
bsj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
UP17_14025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsj03400
]
UP17_14025
Enzymes [BR:
bsj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
UP17_14025
DNA repair and recombination proteins [BR:
bsj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
UP17_14025
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMM93448
UniProt:
A0A9W3WM03
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Position
3038587..3040431
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AA seq
614 aa
AA seq
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MKPMLPTYYPEAPTSKDWRYEVKYDGFRAILTIDSDTISISSRNEKELSPQFPEIIAYIK
NLDLEDYLPLQLDGELVWLTNQAKADFFQIQWRGRLGKQSLISEKAHFSPCRFIAFDLIR
INGKDIAAKPMEERRGFMLNMGEALGFPMPPDPNDKALIQLIESFDVLDNALNKVILLDG
EGVVAKEVRGTWQEGKRTSSWIKVKNWKTVSCFITALHKENGYVSLAVLKEGAATKIGSV
KNGLSAQDKRILHELIKQNASDEDAQFFYIHPSICIEVQFLHVYEENELREPQFSQWLLQ
TAPEECTWEKFVIGQYTFPDTVQITSKDKPLWITGRKKVVKVEYLHYLREVSSFFLPFLK
DKLLTTIRYPHGTMDKERFFQKNKPDYAPAFIKTFMDVDIEYMLCNDIETLLWFGNQLAL
EFHAPFQKAGKTRPDEIVLDLDPPSIEFFSLAIKAAQEIKKVMESLRIKAFVKTSGNKGL
QIHIPLPDDRFTYQETRIFTDFLGDYLTSSNPNDFTTERMKINRHNRLYLDFVQHSEGKT
IIVPYSPRGNSFAGVATPLFWKEVDESLQLKDYTIETVPNRLKREGCPFMDYRLVDNGPA
FLEVLSFLKQKKTN
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgctgccaacctattaccctgaagcccccacctccaaagattggcgttat
gaggtcaaatatgacggctttagggcaattttaacgatagactccgatacgataagcatc
tcgagtcgaaacgagaaggaattatcaccacaattcccagaaatcattgcttacatcaaa
aatttggacctggaagattatctcccgctacagttagatggagagttggtttggcttacc
aatcaagcaaaggccgactttttccaaatacagtggcgagggcgccttgggaaacaatcc
ttaatttcagaaaaagctcatttttcgccatgccggtttattgcgtttgacctgattcgc
atcaacggaaaagacatagctgctaaacctatggaagaacgaaggggattcatgctgaat
atgggtgaagcacttggttttcctatgccgcctgaccccaacgataaggctttgatccaa
ttaattgagagttttgacgttttggataatgccttgaataaggtcatcctattagatggc
gaaggggttgtcgctaaggaagttcggggtacttggcaagaaggaaaacgtacttcatct
tggatcaaagtgaaaaattggaagaccgtttcttgtttcattacagcattgcacaaagaa
aatggttacgtttccctcgcagttttaaaagaaggtgccgcaacgaaaatcggaagtgtt
aaaaatggactgagtgctcaagataaaaggatattgcatgagctgatcaagcaaaatgca
tcagatgaagatgcacaatttttttatatccatccatccatttgcatcgaagttcaattc
ctacacgtatatgaggaaaatgaattgcgtgaacctcagttttcgcaatggcttttacaa
acggctcccgaagaatgcacctgggagaaattcgtgataggccagtacacgtttccagat
actgtacaaataacctccaaggataaaccgctttggataactggtagaaaaaaggtggta
aaagttgaatacctccattatttaagagaggtttcatccttcttcttacctttcttaaag
gataaactgcttacgacaatccgttatcctcatggcactatggataaagaaagatttttc
cagaaaaacaaacctgattatgcgccggcctttattaaaacgttcatggatgtggatatc
gagtatatgctgtgtaacgatattgaaacgcttctttggtttggtaatcaacttgcattg
gaattccatgccccatttcagaaagcgggtaaaacaagaccagacgaaatcgtcctggac
ttagaccctccttccatcgaatttttctcattggcgataaaggccgcacaggaaattaaa
aaagtgatggaatcattaaggataaaggcttttgtaaaaacgtcaggtaacaaaggactg
caaattcacatccctctgcctgatgacaggtttacttatcaggagacacgcatattcacc
gactttctcggcgactacctaaccagttccaacccaaatgattttacaacggaaagaatg
aaaataaatcggcataatcgactttacttggactttgtgcagcatagtgaaggaaaaacc
ataattgttccttattccccacgcggaaattctttcgcgggtgtggccacacctttgttt
tggaaggaagtggacgaaagtctccagttgaaggactatacgattgaaaccgtaccaaac
agattaaaaagggaagggtgtccatttatggattacagacttgtcgataatggcccagcc
tttttggaagtattgtcgttcctaaaacaaaaaaagaccaactaa
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