KEGG   Peribacillus simplex: UP17_14025
Entry
UP17_14025        CDS       T04304                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bsj  Peribacillus simplex
Pathway
bsj03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bsj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    UP17_14025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bsj03400]
    UP17_14025
Enzymes [BR:bsj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     UP17_14025
DNA repair and recombination proteins [BR:bsj03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     UP17_14025
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AMM93448
UniProt: A0A9W3WM03
LinkDB
Position
3038587..3040431
AA seq 614 aa
MKPMLPTYYPEAPTSKDWRYEVKYDGFRAILTIDSDTISISSRNEKELSPQFPEIIAYIK
NLDLEDYLPLQLDGELVWLTNQAKADFFQIQWRGRLGKQSLISEKAHFSPCRFIAFDLIR
INGKDIAAKPMEERRGFMLNMGEALGFPMPPDPNDKALIQLIESFDVLDNALNKVILLDG
EGVVAKEVRGTWQEGKRTSSWIKVKNWKTVSCFITALHKENGYVSLAVLKEGAATKIGSV
KNGLSAQDKRILHELIKQNASDEDAQFFYIHPSICIEVQFLHVYEENELREPQFSQWLLQ
TAPEECTWEKFVIGQYTFPDTVQITSKDKPLWITGRKKVVKVEYLHYLREVSSFFLPFLK
DKLLTTIRYPHGTMDKERFFQKNKPDYAPAFIKTFMDVDIEYMLCNDIETLLWFGNQLAL
EFHAPFQKAGKTRPDEIVLDLDPPSIEFFSLAIKAAQEIKKVMESLRIKAFVKTSGNKGL
QIHIPLPDDRFTYQETRIFTDFLGDYLTSSNPNDFTTERMKINRHNRLYLDFVQHSEGKT
IIVPYSPRGNSFAGVATPLFWKEVDESLQLKDYTIETVPNRLKREGCPFMDYRLVDNGPA
FLEVLSFLKQKKTN
NT seq 1845 nt   +upstreamnt  +downstreamnt
atgaaaccaatgctgccaacctattaccctgaagcccccacctccaaagattggcgttat
gaggtcaaatatgacggctttagggcaattttaacgatagactccgatacgataagcatc
tcgagtcgaaacgagaaggaattatcaccacaattcccagaaatcattgcttacatcaaa
aatttggacctggaagattatctcccgctacagttagatggagagttggtttggcttacc
aatcaagcaaaggccgactttttccaaatacagtggcgagggcgccttgggaaacaatcc
ttaatttcagaaaaagctcatttttcgccatgccggtttattgcgtttgacctgattcgc
atcaacggaaaagacatagctgctaaacctatggaagaacgaaggggattcatgctgaat
atgggtgaagcacttggttttcctatgccgcctgaccccaacgataaggctttgatccaa
ttaattgagagttttgacgttttggataatgccttgaataaggtcatcctattagatggc
gaaggggttgtcgctaaggaagttcggggtacttggcaagaaggaaaacgtacttcatct
tggatcaaagtgaaaaattggaagaccgtttcttgtttcattacagcattgcacaaagaa
aatggttacgtttccctcgcagttttaaaagaaggtgccgcaacgaaaatcggaagtgtt
aaaaatggactgagtgctcaagataaaaggatattgcatgagctgatcaagcaaaatgca
tcagatgaagatgcacaatttttttatatccatccatccatttgcatcgaagttcaattc
ctacacgtatatgaggaaaatgaattgcgtgaacctcagttttcgcaatggcttttacaa
acggctcccgaagaatgcacctgggagaaattcgtgataggccagtacacgtttccagat
actgtacaaataacctccaaggataaaccgctttggataactggtagaaaaaaggtggta
aaagttgaatacctccattatttaagagaggtttcatccttcttcttacctttcttaaag
gataaactgcttacgacaatccgttatcctcatggcactatggataaagaaagatttttc
cagaaaaacaaacctgattatgcgccggcctttattaaaacgttcatggatgtggatatc
gagtatatgctgtgtaacgatattgaaacgcttctttggtttggtaatcaacttgcattg
gaattccatgccccatttcagaaagcgggtaaaacaagaccagacgaaatcgtcctggac
ttagaccctccttccatcgaatttttctcattggcgataaaggccgcacaggaaattaaa
aaagtgatggaatcattaaggataaaggcttttgtaaaaacgtcaggtaacaaaggactg
caaattcacatccctctgcctgatgacaggtttacttatcaggagacacgcatattcacc
gactttctcggcgactacctaaccagttccaacccaaatgattttacaacggaaagaatg
aaaataaatcggcataatcgactttacttggactttgtgcagcatagtgaaggaaaaacc
ataattgttccttattccccacgcggaaattctttcgcgggtgtggccacacctttgttt
tggaaggaagtggacgaaagtctccagttgaaggactatacgattgaaaccgtaccaaac
agattaaaaagggaagggtgtccatttatggattacagacttgtcgataatggcccagcc
tttttggaagtattgtcgttcctaaaacaaaaaaagaccaactaa

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